Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p13
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 33 0.26
03_05_0777 + 27636342-27637115 32 0.45
12_01_0630 - 5203802-5204111,5204896-5204900 29 3.2
01_06_0453 + 29501600-29502403 29 3.2
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 29 4.2
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 4.2
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 29 4.2
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 5.5
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 5.5
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 9.6
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 9.6
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 286 PHSTDRHSDH*VHPRAVRSLPLANKYLYNA 375
P STD H H VHP + S P A+++L +A
Sbjct: 174 PSSTDHHRRHKVHPAFLHSAPSADRFLASA 203
>03_05_0777 + 27636342-27637115
Length = 257
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 252 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPA 347
R A + R AT L + +R+L PPP P PA
Sbjct: 187 RDAALSNRAEATALRAELERALQPPPPPPPPA 218
>12_01_0630 - 5203802-5204111,5204896-5204900
Length = 104
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 255 GAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ----*IFVQRGRAARLGASEG 407
G VRRR R TL + R++S R P+P +R+ + QR R GAS G
Sbjct: 2 GTRVRRRWRDGTLRPPSCRAISRRYRSPRPRSREDDTDRVDEQRLRVLAAGASPG 56
>01_06_0453 + 29501600-29502403
Length = 267
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 KVLVDDSHSERGAHVRRRP-RATTLHGQAQRSLSPPPRGPKPA 347
KV V S S + R P +A Q QR+ PPPR P PA
Sbjct: 165 KVAVKKSSSSEVRKLERAPAQAQRQVLQVQRAQPPPPRAPAPA 207
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 653 LHAAHARRVVNACFRAA*TGAAQPARG*RPRSSALLAATSPARF 784
LH H+ A F + G+ Q G PRS A + SP+RF
Sbjct: 266 LHHVHSISPSTASFARSPFGSLQHNSGHTPRSPATFSTASPSRF 309
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 234 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAA 386
DD H+E + RR R+ + Q L+PPP P +Q I G AA
Sbjct: 211 DDDHAEAARNGVRRWRSGSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAA 261
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +3
Query: 234 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEGAG 413
D S RG H +R A ++ SPP P + + GR + A G G
Sbjct: 209 DGYRSSRGRHAQRAAAAAAQEELSREETSPPTASTSPETLEALIKADGRV--MAAVTGGG 266
Query: 414 GARRD*IILESRG*GS 461
R ++++ GS
Sbjct: 267 RTRASSVLMQLISCGS 282
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = -1
Query: 733 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 644
PS W+C + C A D C CC+ LF
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 246 SERGAHVRRRPRATTLHGQAQRSLSPPPRGPK 341
S G+ + RRP+ L Q+ S PPP P+
Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 282 ATTLHGQAQRSLSPPPRGPKPA---ARQ*IFVQRGRAARLGASEGAGGARRD 428
AT ++ + SPPP P PA + + F RAAR SE + GA +
Sbjct: 105 ATARRKRSASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGAEEE 156
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 364 NIYWRAAGFGPRGGGLSDRCACPWSVVARGRR 269
N++ + G G GGG + CPW+ G R
Sbjct: 40 NVFDQEVGVGGEGGGGGEGSGCPWARPCDGCR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,209
Number of Sequences: 37544
Number of extensions: 378934
Number of successful extensions: 1517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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