Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p11
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    40   2e-04
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    31   0.11 
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    28   0.59 
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    27   1.4  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.2  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   4.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.5  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   5.5  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.3  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    24   9.6  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 39/73 (53%)
 Frame = -3

Query: 315 VTMQVASRSGNKKVTLVSNLEAYGFNLLELSAVCQRGVAASCGVTRSPGAKHDQLMLQGD 136
           V ++   R+  K+VT V  L+A+G    + + +     A    VT++   K D++++QGD
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKK-DEIVVQGD 157

Query: 135 QTHFVAKLLIEKY 97
             + +   ++EK+
Sbjct: 158 LNYDIFDFILEKF 170


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 21/70 (30%), Positives = 38/70 (54%)
 Frame = -3

Query: 291 SGNKKVTLVSNLEAYGFNLLELSAVCQRGVAASCGVTRSPGAKHDQLMLQGDQTHFVAKL 112
           S N K T+  ++ A+G ++ ELSA  +R + ++    ++P    DQL+LQ +       L
Sbjct: 485 SQNAKDTIQKDISAFGKDIFELSAQSER-ILSNLAEKKNPNT--DQLLLQANSYLAQWDL 541

Query: 111 LIEKYGLPKK 82
           L ++  + KK
Sbjct: 542 LKDERNMLKK 551


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -3

Query: 246 GFNLLELSAVCQRGVAASCGVTRSPGAKHDQLMLQGDQTHFVAKLLIEKYGLPK 85
           G ++L      + G+AA+C  +   G    +L++Q D+T F AKL+  K  LPK
Sbjct: 82  GVSILRAGESMEYGLAAACNYSVPVG----KLLVQRDETTFEAKLMFCK--LPK 129


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 20/69 (28%), Positives = 27/69 (39%)
 Frame = -3

Query: 435 PGEHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNL 256
           PGE       ++G L    P   +         S     PVT ++ S S NK   L  +L
Sbjct: 48  PGESGALNGTINGYLTLPQPDGCLLVLQHGAGSSAMSFAPVTQELLSNSDNKVGFLALDL 107

Query: 255 EAYGFNLLE 229
            A+G   LE
Sbjct: 108 RAHGETTLE 116


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 237 LLELSAVCQRGVAASCGVTRSPGAKHDQLMLQGDQTHFVAKL 112
           L +L+  CQ  +  S G+    GA +++  +     H++ KL
Sbjct: 215 LSQLATACQADLTLSAGLHFRYGASYNEFCVNHSPEHYLQKL 256


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 131 VWSPCSMSWSCLAPGERVTPQEA----ATPR*HT-ALSSNRLNPYASRLDTRVTFLFPLR 295
           ++SP + S+     G + TPQ A    +T   HT   SS   +P++    +   FL PL+
Sbjct: 143 IFSPVTESFEAFTQGMQTTPQRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPNFLTPLK 202


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 137 SPCSMSWSCLAPGERVTPQEAA 202
           +P S+ W  L  GE  TPQEAA
Sbjct: 218 NPVSL-WKSLPEGETFTPQEAA 238


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 91   QSIF--FDQ*FSNKMCLVSLQHEL 156
            QS+F    + FSN+MCL+S+Q+ +
Sbjct: 1424 QSLFVRIQKNFSNQMCLLSIQYRM 1447


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 427 THNVGGPDVGCAEENDSEY*DTVRRRRAEAVQEPPRARHHAGRQPQ 290
           T  VG P +  ++ N  +  +T R+  A +    P+AR H  R  +
Sbjct: 276 TSYVGSPALKQSKPNSLKSNNTSRKTSASSAITKPKARPHTSRHDE 321


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 426 HITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNK 280
           +++ EDL +G  KKM  S  I  A G+  +   R+  + ++   ++G K
Sbjct: 212 NVSLEDLFTGCTKKMKISRHIIDASGQ-SVKADRILEIKVKPGWKAGTK 259


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 103 KIWTAKKICRRVL 65
           KIW+ +K+C RVL
Sbjct: 217 KIWSMEKLCNRVL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,059
Number of Sequences: 5004
Number of extensions: 35394
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)