Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p11
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 55 2e-08
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 36 0.012
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 31 0.44
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 31 0.44
08_01_1003 + 10174556-10174951 29 2.3
11_06_0481 + 24092574-24093962 28 3.1
01_06_1379 + 36801473-36801889 28 3.1
03_05_1078 + 30205876-30206346,30206624-30207001,30207967-302080... 28 4.1
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109... 27 5.4
01_01_1201 + 9678893-9679311,9679415-9679721 27 5.4
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 27 7.2
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 27 7.2
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 7.2
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780... 27 7.2
05_05_0177 - 22993844-22994617 27 7.2
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 27 7.2
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 27 7.2
12_02_0460 + 19360075-19360320,19361189-19361368 27 9.5
06_03_0220 + 18276641-18276915,18278445-18278676 27 9.5
03_06_0227 - 32500603-32500621,32502346-32502602 27 9.5
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 27 9.5
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 27 9.5
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 55.2 bits (127), Expect = 2e-08
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Frame = -3
Query: 411 DLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYGFNLL 232
DL S L +M + + E+ + + + + + R GNKK+T +S LE + +
Sbjct: 477 DLGSTFLNRMQIHHRVARGN-EVVIRKGAIRTIQIMTERRQGNKKMTRLSGLECFLMDPD 535
Query: 231 ELSAVCQRGVAASCGVTRSPGAK-HDQLMLQGDQTHFVAKLLIEKYGLPKKFVE 73
L++ Q+ A S PG K ++++QG +AK L++ YG+PK+F+E
Sbjct: 536 SLASELQKKFACSTTTAELPGKKGQHEVLVQGGVIDDLAKHLVDHYGVPKRFIE 589
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 294 GWRPAW*RARGGSWTASALRRRTVSQYSESFSSAHPTSGPPTLCVPR 434
GWRP W RGG S +RRR ++ ++A +G + VPR
Sbjct: 63 GWRPRWFAIRGGVLAYSKIRRRVAAEPPPEAAAAAAANGVRLIGVPR 109
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3
Query: 354 DGELRLSRSRLEPVTMQVASRSGNKK 277
DG+ R+SR RL PVT +VA + G K
Sbjct: 209 DGDRRISRLRLPPVTARVAPQPGGAK 234
>02_05_1196 -
34901320-34901342,34901937-34902041,34902314-34902482,
34902645-34902716,34902788-34902871,34903219-34903317,
34903416-34903515,34903704-34903878,34903985-34904198,
34904727-34904803,34904879-34905048,34905593-34905629,
34905988-34906123,34906658-34906915
Length = 572
Score = 31.1 bits (67), Expect = 0.44
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = -3
Query: 354 DGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYGFNLLELSAVCQRGVAASCGVTRS 175
+G L LSR + VT + SRSGN +N G + C+ + +TR+
Sbjct: 415 EGSL-LSRQN-KIVTQFILSRSGNSVTGKPNNSSGDGTVSYNSLSWCKNWLGPKVNITRA 472
Query: 174 PGAKHDQLMLQ 142
P A+HD LQ
Sbjct: 473 PQAEHDGSDLQ 483
>08_01_1003 + 10174556-10174951
Length = 131
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 294 GWRPAW*RARGGSWTASALRRRTVSQYSESFSSAHPTSGP 413
GWRPAW R S + R+ S SES SGP
Sbjct: 30 GWRPAWSEYR---MRRSVMARQPASSVSESKRRGRARSGP 66
>11_06_0481 + 24092574-24093962
Length = 462
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 288 RCG-WRPAW*RARGGSWTASALRRRTVSQYSESFSSAHPTSGPP 416
RC WRP W S + +A R VS +S SS+ +S P
Sbjct: 23 RCNPWRPCWTPVAAPSSSGAARRGHGVSPWSLGVSSSTSSSSTP 66
>01_06_1379 + 36801473-36801889
Length = 138
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 321 RGGSWTASALRRRTVSQYSESFSSAHPTSGPPTLCVPRAADPT 449
R WTA+ RR + + +F A GP + R+ D T
Sbjct: 56 RSARWTATRFYRRARASVARAFRPASTKKGPASCAASRSPDCT 98
>03_05_1078 +
30205876-30206346,30206624-30207001,30207967-30208092,
30209569-30209805
Length = 403
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 415 GGPDVGCAEENDSEY*DTVRRRRAEAVQ-EPPRARHHAGRQPQRKQK 278
GG + G EE + E RRRR + E R H R+ QR++K
Sbjct: 94 GGGEKGEGEEMEEEEEVPQRRRRGQGADVESSRGFRHMMRERQRREK 140
>03_01_0138 -
1089063-1089266,1089590-1089671,1089937-1090390,
1091094-1091634
Length = 426
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 342 SALRRRTVSQYSESFSSAHPTSGPPTLCVPRA 437
S R R +Q +SF S +SGPPT+ P A
Sbjct: 71 SGHRSRNRAQDDDSFDSESSSSGPPTVKRPAA 102
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 400 GCAEENDSEY*DTVRRRRAEAVQEPPRARHHAGRQPQRKQKGDSS 266
G +E+ ++ + VRRR AE +E AR + QP ++KG S+
Sbjct: 103 GETDESAWQHGEDVRRRAAEKAEE---ARRRSEPQPSSEEKGRSA 144
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -2
Query: 331 EPPRARHHAGRQPQRKQKGDSSV*PGSIWIQPVGAERSVSARSGSLLRRHA 179
EPP RH P R + P P+ A + V A SL ++HA
Sbjct: 406 EPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSLAKQHA 456
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 313 HHAGRQPQRKQKGDSSV*PGSIW---IQPVGAERSVSARSGSLLRRHALSW 170
HH G QPQ ++KG S+ +W + +G ARS S +R + W
Sbjct: 141 HHHGGQPQMQRKGGSNPKSPIVWKAADEMIGVPVPRKARSAS-TKRSSHEW 190
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 180 RSPGAKHDQLMLQGDQTHFVAKLLIEKYGL 91
R+PG H QL + D + LL+++YGL
Sbjct: 407 RTPGECHSQLRMNTDLFLDLNDLLVQRYGL 436
>05_07_0352 -
29475855-29476330,29476421-29477165,29477689-29478081,
29478167-29478473,29478694-29479019
Length = 748
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 180 RSPGAKHDQLMLQGDQTHFVAKLLIEKYGL 91
R+PG H QL + D + LL+++YGL
Sbjct: 401 RTPGECHSQLRMNTDLFLDLNDLLVQRYGL 430
>05_05_0177 - 22993844-22994617
Length = 257
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 316 GLEAAPGQPQLSVGELYLSTRSHFLQHTRHQVLPRYVFPG 435
GL AA + LS+ +L + L H RH LP+ G
Sbjct: 135 GLRAAVDERDLSMDPAFLPELAALLPHRRHVALPQVFVNG 174
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 174 PGAKHDQLMLQGDQTHFVAKLLIEKYGLPKKFVEGC*QGIKPGRSSPSKGL 22
PG+ HD + QT F AK K L K ++ +PG +P KG+
Sbjct: 694 PGSVHDMRVFNDAQTRFSAK--FPKLPLGKFYLVDSGYPNRPGYLAPYKGI 742
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 435 PGEHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRL-EPVTMQVASRSGNK 280
P EH TW D ++ K+ PST DG L + + +P + +A G K
Sbjct: 779 PSEHFTWRDGVTVPCGKLVPSTN---KDGPLEYNEYAVYDPKQVSIAFLVGVK 828
>12_02_0460 + 19360075-19360320,19361189-19361368
Length = 141
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 418 VGGPDVGCAEENDSEY*DTVRRRRAEAVQEPPRARHHAGR 299
+ G CA E+ E D RRR + V PR RHH R
Sbjct: 99 IAGLVEACAPEHLDEVADVRHRRRVD-VFPRPRRRHHRRR 137
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 346 AEAVQEPPRARHHAGRQPQRKQKGDSSV*PGSIWIQPVGAERSVSARSG 200
+EAVQ R AGR +R+++ S P S + P+ RS SG
Sbjct: 70 SEAVQPAAAGRARAGRAQERRERSRCSRPPFSEALPPLIPSRSGRRPSG 118
>03_06_0227 - 32500603-32500621,32502346-32502602
Length = 91
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 292 AAGDLHGDGLEAAPG 336
AA DLHGDGL A G
Sbjct: 70 AASDLHGDGLTATAG 84
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 438 QPGEHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSN 259
Q G +E+ + K +TP+ D EL+ + +R P+ + V+ +SG K TLV N
Sbjct: 254 QQGNLTLYEEHQEELEKALTPT------DQELQKNDNR--PIVVSVSGKSGVGKTTLVRN 305
Query: 258 L 256
+
Sbjct: 306 V 306
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 354 RRTVSQYSESFSSAHPTSGPPTLCVP 431
R V +Y+E+ S AH GP + C+P
Sbjct: 124 RLLVYEYAENNSLAHALLGPRSRCIP 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,995
Number of Sequences: 37544
Number of extensions: 279593
Number of successful extensions: 1073
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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