Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p11
         (455 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    25   1.3  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   5.1  
AY748836-1|AAV28184.1|   89|Anopheles gambiae cytochrome P450 pr...    22   8.9  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 391  EENDSEY*DTVRRRRAEAVQEPPRARHHAGRQPQRKQKGD 272
            +ENDS+      +RR   +Q   R  H AG + +R   G+
Sbjct: 1585 KENDSKLNSDQNKRRTMTLQAGLRTLHEAGPELKRAISGN 1624



 Score = 22.6 bits (46), Expect = 6.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 199  CHSSLTHCAQLQQVESI 249
            C   L HCAQ++  E++
Sbjct: 1829 CDLDLVHCAQMEMQEAL 1845


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 101 FSISSLATKCVWSPCSMSWSCLAPGERV 184
           + I S A KC   PC++  + L+  ERV
Sbjct: 547 WGIISTAQKCCNKPCNIFQAVLSVKERV 574


>AY748836-1|AAV28184.1|   89|Anopheles gambiae cytochrome P450
           protein.
          Length = 89

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 372 TEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYGFNLLELSAVCQRG 205
           T I++ +  L + R     + +Q      N + T    LE+ GF+  E   V QRG
Sbjct: 1   TNIRYRERNL-IKRPDFIHLLLQARRNELNSEQTEDDALESAGFSTAETHTVEQRG 55


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,656
Number of Sequences: 2352
Number of extensions: 8956
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39119412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)