Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p11
(455 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC058905-1|AAH58905.1| 584|Homo sapiens ligatin protein. 101 9e-22
BC039134-1|AAH39134.2| 584|Homo sapiens ligatin protein. 101 9e-22
BC001585-1|AAH01585.1| 584|Homo sapiens ligatin protein. 101 9e-22
AL591846-2|CAI13534.1| 584|Homo sapiens ligatin protein. 101 9e-22
AL591846-1|CAI13533.1| 460|Homo sapiens ligatin protein. 101 9e-22
AL162001-1|CAB82330.1| 389|Homo sapiens hypothetical protein pr... 101 9e-22
AK130182-1|BAC85299.1| 440|Homo sapiens protein ( Homo sapiens ... 101 9e-22
AK001852-1|BAA91942.1| 584|Homo sapiens protein ( Homo sapiens ... 101 9e-22
AF262403-1|AAF74205.1| 460|Homo sapiens hepatocellular carcinom... 101 9e-22
AF220417-1|AAF34185.2| 584|Homo sapiens hepatocellular carcinom... 101 9e-22
BX538286-1|CAD98081.1| 724|Homo sapiens hypothetical protein pr... 31 2.5
BC033033-1|AAH33033.1| 367|Homo sapiens chromosome 6 open readi... 31 2.5
AM082343-1|CAL06489.1| 101|Homo sapiens immunoglobulin heavy ch... 31 2.5
AL139421-4|CAI22511.1| 720|Homo sapiens coiled-coil domain cont... 31 2.5
AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain cont... 31 2.5
AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain cont... 31 2.5
AK126045-1|BAC86410.1| 978|Homo sapiens galactosaminyltransfera... 31 2.5
AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens ... 29 5.7
AM080338-1|CAL04484.1| 101|Homo sapiens immunoglobulin heavy ch... 29 7.6
AM083192-1|CAL07338.1| 101|Homo sapiens immunoglobulin heavy ch... 29 10.0
>BC058905-1|AAH58905.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>BC039134-1|AAH39134.2| 584|Homo sapiens ligatin protein.
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>BC001585-1|AAH01585.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>AL591846-2|CAI13534.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>AL591846-1|CAI13533.1| 460|Homo sapiens ligatin protein.
Length = 460
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 331 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 390
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 391 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 450
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 451 EKALKPGK 458
>AL162001-1|CAB82330.1| 389|Homo sapiens hypothetical protein
protein.
Length = 389
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 260 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 319
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 320 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 379
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 380 EKALKPGK 387
>AK130182-1|BAC85299.1| 440|Homo sapiens protein ( Homo sapiens
cDNA FLJ26672 fis, clone MPG03403, highly similar to
Ligatin (Hepatocellular carcinoma-associated antigen
56). ).
Length = 440
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 311 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 370
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 371 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 430
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 431 EKALKPGK 438
>AK001852-1|BAA91942.1| 584|Homo sapiens protein ( Homo sapiens
cDNA FLJ10990 fis, clone PLACE1002046, highly similar to
LIGATIN. ).
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>AF262403-1|AAF74205.1| 460|Homo sapiens hepatocellular
carcinoma-associated antigen 56A protein.
Length = 460
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 331 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 390
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 391 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 450
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 451 EKALKPGK 458
>AF220417-1|AAF34185.2| 584|Homo sapiens hepatocellular
carcinoma-associated antigen 56 protein.
Length = 584
Score = 101 bits (243), Expect = 9e-22
Identities = 47/128 (36%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 423 ITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYG 244
+ W+ L++ L+K+ P+ ++ E + + R+ P+ + +A R+ NKKVT+V NLEAYG
Sbjct: 455 LPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYG 514
Query: 243 FNLLELSAVCQRGVAASCGVTRSPGAKHD-QLMLQGDQTHFVAKLLIEKYGLPKKFVEGC 67
+ ++A+ Q+ AS V +PGAK Q+ +QG+Q H + LL+E+Y LP+K ++G
Sbjct: 515 LDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGL 574
Query: 66 *QGIKPGR 43
+ +KPG+
Sbjct: 575 EKALKPGK 582
>BX538286-1|CAD98081.1| 724|Homo sapiens hypothetical protein
protein.
Length = 724
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 429 EHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPV--TMQVASRSGNKKVTLVSNL 256
+H T +L + K+ TE+Q A GEL+ + +L+ + +Q A S +K T + +L
Sbjct: 606 QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL 665
Query: 255 EA 250
A
Sbjct: 666 TA 667
>BC033033-1|AAH33033.1| 367|Homo sapiens chromosome 6 open reading
frame 81 protein.
Length = 367
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 128 CVWSPCSMSWSCLAPGERVTPQEAATP 208
C SP ++ C PGER PQEA P
Sbjct: 46 CSNSPICIARECPGPGERALPQEAPAP 72
>AM082343-1|CAL06489.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 256 GSIWIQPVGAERSVSARSGSLLRRHALSW 170
G W+QP G+ R A SG R +AL+W
Sbjct: 11 GGGWVQPGGSLRLSCAASGFTFRNYALTW 39
>AL139421-4|CAI22511.1| 720|Homo sapiens coiled-coil domain
containing 18 protein.
Length = 720
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 429 EHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPV--TMQVASRSGNKKVTLVSNL 256
+H T +L + K+ TE+Q A GEL+ + +L+ + +Q A S +K T + +L
Sbjct: 605 QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL 664
Query: 255 EA 250
A
Sbjct: 665 TA 666
>AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain
containing 18 protein.
Length = 1044
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 429 EHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPV--TMQVASRSGNKKVTLVSNL 256
+H T +L + K+ TE+Q A GEL+ + +L+ + +Q A S +K T + +L
Sbjct: 675 QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL 734
Query: 255 EA 250
A
Sbjct: 735 TA 736
>AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain
containing 18 protein.
Length = 1454
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 429 EHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPV--TMQVASRSGNKKVTLVSNL 256
+H T +L + K+ TE+Q A GEL+ + +L+ + +Q A S +K T + +L
Sbjct: 929 QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL 988
Query: 255 EA 250
A
Sbjct: 989 TA 990
>AK126045-1|BAC86410.1| 978|Homo sapiens galactosaminyltransferase
9 protein.
Length = 978
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 429 EHITWEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPV--TMQVASRSGNKKVTLVSNL 256
+H T +L + K+ TE+Q A GEL+ + +L+ + +Q A S +K T + +L
Sbjct: 609 QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL 668
Query: 255 EA 250
A
Sbjct: 669 TA 670
>AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens
cDNA FLJ40545 fis, clone THYMU2001195. ).
Length = 193
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 152 SWSC--LAPGERVTPQEAATPR*HTALSSNRLNPYASRL 262
SW+ L PG P A P HTA + +R P+ +RL
Sbjct: 36 SWAADGLLPGGTTAPHRAGPPACHTARAISRWMPHGARL 74
>AM080338-1|CAL04484.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 29.1 bits (62), Expect = 7.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 256 GSIWIQPVGAERSVSARSGSLLRRHALSW 170
G +QP G+ R A SG RHA+SW
Sbjct: 11 GGTLVQPGGSLRLSCAASGFTFSRHAMSW 39
>AM083192-1|CAL07338.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 28.7 bits (61), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 256 GSIWIQPVGAERSVSARSGSLLRRHALSW 170
G W+QP G+ R A SG +A+SW
Sbjct: 11 GGGWVQPGGSLRLSCAASGLTFNSYAMSW 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,651,701
Number of Sequences: 237096
Number of extensions: 1542964
Number of successful extensions: 11208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11193
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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