Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p11
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical p... 85 2e-17
U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical pr... 35 0.024
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 31 0.53
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 31 0.53
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 31 0.53
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 31 0.53
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 31 0.53
U39649-1|AAA80383.2| 437|Caenorhabditis elegans Temporarily ass... 29 1.2
AF067219-14|AAC17034.1| 206|Caenorhabditis elegans Hypothetical... 28 2.8
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 27 4.9
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 27 4.9
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 27 4.9
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 27 4.9
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 27 4.9
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 27 4.9
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 27 4.9
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 27 4.9
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 27 4.9
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 6.5
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 6.5
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 6.5
Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 8.6
U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase ... 27 8.6
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 8.6
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 8.6
>U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical
protein C25H3.4 protein.
Length = 516
Score = 85.0 bits (201), Expect = 2e-17
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Frame = -3
Query: 417 WEDLMSGVLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLVSNLEAYGFN 238
W +LM + +MT + I++ DG + + V ++ +R+GNKKVTL++ L +G +
Sbjct: 391 WANLMKEIHSRMTATWHIRWPDGREIVRKVSPPRVEFKIENRAGNKKVTLLNGLAMFGID 450
Query: 237 LLELSAVCQRGVAAS-CGVTRSPGAKHDQLMLQGDQTHFVAKLLIEKYGLPKKFVEGC*Q 61
+ + Q GVA S PG + Q+++QG+Q HF+A LLI+ YG+ KKF++G
Sbjct: 451 IRTICHQIQTGVATSVTSQWEVPGVEGPQVLVQGNQIHFIADLLIKSYGIDKKFMKGTEL 510
Query: 60 GIK 52
+K
Sbjct: 511 AVK 513
>U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical
protein W01A11.5 protein.
Length = 746
Score = 35.1 bits (77), Expect = 0.024
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -3
Query: 219 VCQRGVAASCGVTRSPGAKHDQLMLQGDQTHFVAKL 112
VC R VTR PG K DQL+L G Q H V L
Sbjct: 275 VCTRHYKNMYAVTREPGKKIDQLILHGIQKHIVVVL 310
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 396 VLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLV 265
+L M +EIQ AD ++ LSRS + ++VA+R GN T++
Sbjct: 412 LLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIM 455
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 396 VLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLV 265
+L M +EIQ AD ++ LSRS + ++VA+R GN T++
Sbjct: 256 LLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIM 299
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 396 VLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLV 265
+L M +EIQ AD ++ LSRS + ++VA+R GN T++
Sbjct: 412 LLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIM 455
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 396 VLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLV 265
+L M +EIQ AD ++ LSRS + ++VA+R GN T++
Sbjct: 262 LLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIM 305
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 396 VLKKMTPSTEIQFADGELRLSRSRLEPVTMQVASRSGNKKVTLV 265
+L M +EIQ AD ++ LSRS + ++VA+R GN T++
Sbjct: 412 LLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIM 455
>U39649-1|AAA80383.2| 437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 249 protein.
Length = 437
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +2
Query: 5 FIYHYYSPFEGLL---LPGLMPCQHPSTNFFGSPYF----SISSLATKCVWSPCSMSWSC 163
F+Y +Y+ G++ L G + ++NF + + +I + V+ PC + W
Sbjct: 125 FLYRWYAKLIGIVEEELFGHIDQIFVNSNFTATQFCKVMPNIEKNKVRVVYPPCDIDWIV 184
Query: 164 LAPGERVTPQEAATPR*HTALSSNRLNPYASRLD 265
A V+ + A +T LS NR P RLD
Sbjct: 185 SASERPVSRAQRAKNETYTFLSMNRFWP-EKRLD 217
>AF067219-14|AAC17034.1| 206|Caenorhabditis elegans Hypothetical
protein R12E2.13 protein.
Length = 206
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 330 SRLEPVTMQVASRSGNKKVTLVSN---LEAYGFNLLELSAVCQRGVAASCG 187
SRL ++ S SG + VT V N + ++ L+A C RG A CG
Sbjct: 41 SRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCG 91
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 355 RRRAEAVQEPPRARHHAGRQPQRKQKGDSSV*PGS 251
RRR + PPR R +G +R+++ S+ P S
Sbjct: 110 RRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNS 144
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 63 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 115
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 88 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 140
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 71 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 123
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 84 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 136
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 82 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 134
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 355 RRRAEAVQEPPRARHHAGRQPQRKQKGDSSV*PGS 251
RRR + PPR R +G +R+++ S+ P S
Sbjct: 110 RRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNS 144
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 82 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 134
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 158 SCLAPGERVTPQEAATPR*HTALSSNRLNPYASRLDTRVTFLFPLRLATCMVTG 319
S + P P AATP SSN +PY S L + + PL L + G
Sbjct: 63 SVMRPPPTAPPTSAATPN-RILPSSNAASPYGSPLGSSILSNQPLVLPFAPING 115
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.1 bits (57), Expect = 6.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 157 VVFSARRARDAAGGCHSSLTHCAQLQQVESICFQVRH-*SHLFVSAAAGDLHGDGLEA-A 330
V+F + A D A G H +L ++++ E I R+ S F A+GD D + A
Sbjct: 1997 VIFRSTEASDMAVGIHYTLRSSEKVEETEEIKNIARNGGSATFSCFASGDESPDSVSAFL 2056
Query: 331 PGQPQLSVGELYLST 375
QPQ E T
Sbjct: 2057 TRQPQEETTEKLFPT 2071
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 6.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 157 VVFSARRARDAAGGCHSSLTHCAQLQQVESICFQVRH-*SHLFVSAAAGDLHGDGLEA-A 330
V+F + A D A G H +L ++++ E I R+ S F A+GD D + A
Sbjct: 6843 VIFRSTEASDMAVGIHYTLRSSEKVEETEEIKNIARNGGSATFSCFASGDESPDSVSAFL 6902
Query: 331 PGQPQLSVGELYLST 375
QPQ E T
Sbjct: 6903 TRQPQEETTEKLFPT 6917
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 17 YYSPFEGLLLPGLMPCQHPSTNFFGSPYFSISSLATKCVWSPCSMSWSCLAPGERVTPQE 196
YYS + G LL ++P+ + I +L W+ S+S +C+ PG TP
Sbjct: 108 YYSIYMGNLLITKYAFRNPAN-------WQIGNLLGYGDWTVTSVSMTCVRPGVPTTPDP 160
Query: 197 AAT 205
AT
Sbjct: 161 KAT 163
>Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical
protein K10H10.4 protein.
Length = 236
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 325 PRARHHAGRQPQRKQKGDS 269
PR RHH ++P+RK + DS
Sbjct: 74 PRRRHHKHKKPRRKFRFDS 92
>Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 216 CQRGVAASCGV-TRSPGAKHDQLMLQGDQTHFVAK 115
CQR VA +CG+ + A+ QL L GD+ +K
Sbjct: 290 CQRNVANNCGINAKQMAAELAQLGLTGDKMSIRSK 324
>Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 216 CQRGVAASCGV-TRSPGAKHDQLMLQGDQTHFVAK 115
CQR VA +CG+ + A+ QL L GD+ +K
Sbjct: 290 CQRNVANNCGINAKQMAAELAQLGLTGDKMSIRSK 324
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.6
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -2
Query: 385 NDSEY*DTVR--RRRAEAVQEPPRARHHAG-RQPQRKQKGDSSV*PGSIWIQPVGAERSV 215
NDSE + VR R+ + P A+ G + P+R+ D P PV RS
Sbjct: 365 NDSESSNEVRSSERKRSRRDDSPNAKRSIGLKSPERRSSRDRKSSPKQRQDSPVRRRRSP 424
Query: 214 SA--RSGSLLRRHA 179
S+ + +R+H+
Sbjct: 425 SSIRKESQRVRKHS 438
>U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase C
protein.
Length = 707
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 216 CQRGVAASCGV-TRSPGAKHDQLMLQGDQTHFVAK 115
CQR VA +CG+ + A+ QL L GD+ +K
Sbjct: 290 CQRNVANNCGINAKQMAAELAQLGLTGDKMSIRSK 324
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.6
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -2
Query: 385 NDSEY*DTVR--RRRAEAVQEPPRARHHAG-RQPQRKQKGDSSV*PGSIWIQPVGAERSV 215
NDSE + VR R+ + P A+ G + P+R+ D P PV RS
Sbjct: 365 NDSESSNEVRSSERKRSRRDDSPNAKRSIGLKSPERRSSRDRKSSPKQRQDSPVRRRRSP 424
Query: 214 SA--RSGSLLRRHA 179
S+ + +R+H+
Sbjct: 425 SSIRKESQRVRKHS 438
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 361 VRRRRAEAVQE--PPRARHHAGRQPQRKQK 278
+RRR++ E PP+ H G++P R++K
Sbjct: 260 IRRRKSAPFPEKPPPKKASHTGKKPVREKK 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,009
Number of Sequences: 27780
Number of extensions: 213125
Number of successful extensions: 759
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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