Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p07
(788 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.4
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 24 1.9
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 24 1.9
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 1.9
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 24 1.9
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein. 22 7.5
DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein. 22 7.5
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
EK TCCD+ Y D++ T+ K+L
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTL 241
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKL 342
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 489 DSCIHNYEKSSAWKNYRKHNRKQI 418
+S +NY ++ + NY KHN ++
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKL 342
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 477 HNYEKSSAWKNYRKHNRKQI 418
+NY ++ + NY KHN ++
Sbjct: 90 NNYNYNNNYNNYNKHNYNKL 109
>DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein.
Length = 135
Score = 21.8 bits (44), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 737 KYKRYXELIARQSEAGGASASLRENVNNQL 648
K +RY E I +Q S + +EN+ +L
Sbjct: 58 KPQRYNECILKQFNIVDESGNFKENIVQEL 87
>DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein.
Length = 135
Score = 21.8 bits (44), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 737 KYKRYXELIARQSEAGGASASLRENVNNQL 648
K +RY E I +Q S + +EN+ +L
Sbjct: 58 KPQRYNECILKQFNIVDESGNFKENIVQEL 87
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,783
Number of Sequences: 438
Number of extensions: 4190
Number of successful extensions: 22
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -