Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p06
(249 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 119 2e-28
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 119 2e-28
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 119 2e-28
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 119 2e-28
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 119 2e-28
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 85 6e-18
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 72 6e-14
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 58 1e-09
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 58 1e-09
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 57 2e-09
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 56 4e-09
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 41 1e-04
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 41 1e-04
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 39 4e-04
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 39 4e-04
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 37 0.002
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 35 0.007
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 34 0.012
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 34 0.012
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 33 0.027
Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical pr... 29 0.44
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 29 0.58
AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical... 28 0.76
AL161712-22|CAO82055.1| 158|Caenorhabditis elegans Hypothetical... 27 1.8
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 27 2.3
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 27 2.3
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 27 2.3
Z93396-7|CAL49449.1| 196|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical pr... 26 3.1
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 26 3.1
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 26 3.1
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 26 4.1
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 26 4.1
Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical pr... 25 5.4
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 25 5.4
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 25 5.4
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 25 5.4
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 25 7.1
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 25 7.1
V01494-1|CAA24738.1| 91|Caenorhabditis elegans myosin heavy ch... 25 7.1
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 25 7.1
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 25 7.1
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 61 IQKESTLHLVLRL 73
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 137 IQKESTLHLVLRL 149
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 213 IQKESTLHLVLRL 225
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 289 IQKESTLHLVLRL 301
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 365 IQKESTLHLVLRL 377
Score = 117 bits (281), Expect = 1e-27
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 441 IQKESTLHLVLRL 453
Score = 74.1 bits (174), Expect = 1e-14
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAG 92
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAG
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 137 IQKESTLHLVLRL 149
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 213 IQKESTLHLVLRL 225
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 289 IQKESTLHLVLRL 301
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 365 IQKESTLHLVLRL 377
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 517 IQKESTLHLVLRL 529
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 593 IQKESTLHLVLRL 605
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 669 IQKESTLHLVLRL 681
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 745 IQKESTLHLVLRL 757
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 821 IQKESTLHLVLRL 833
Score = 117 bits (281), Expect = 1e-27
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 441 IQKESTLHLVLRL 453
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 137 IQKESTLHLVLRL 149
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 213 IQKESTLHLVLRL 225
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 289 IQKESTLHLVLRL 301
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 365 IQKESTLHLVLRL 377
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 441 IQKESTLHLVLRL 453
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 517 IQKESTLHLVLRL 529
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 593 IQKESTLHLVLRL 605
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 669 IQKESTLHLVLRL 681
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 745 IQKESTLHLVLRL 757
Score = 118 bits (284), Expect = 6e-28
Identities = 53/73 (72%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 52 IQKESTLHMVLRL 14
IQK+STLH+VLRL
Sbjct: 821 IQKQSTLHLVLRL 833
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 119 bits (287), Expect = 2e-28
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLHMVLRL 14
IQKESTLH+VLRL
Sbjct: 61 IQKESTLHLVLRL 73
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 85.0 bits (201), Expect = 6e-18
Identities = 40/73 (54%), Positives = 51/73 (69%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
M I +KTLTGK I + EP + V +K+K+ +KEG+P QQRLIFAGKQ+ D KT ADY
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 52 IQKESTLHMVLRL 14
+ S LH+VL L
Sbjct: 61 VLGGSVLHLVLAL 73
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 71.7 bits (168), Expect = 6e-14
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = -3
Query: 235 KMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 56
K+ + +KTL GKTI + +TV LK K+ +K GVP DQQRLIF QLE+ + + Y
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAY 219
Query: 55 NIQKESTLHMVLR 17
NI+ E +H+V R
Sbjct: 220 NIRDEDIIHLVSR 232
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 211 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 32
+TG IT E A + DL K+A+ + P ++ +D +T++DYNI+ STL
Sbjct: 98 VTGDPITVEASDA--IKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTL 151
Query: 31 HM 26
+
Sbjct: 152 RL 153
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 244 NSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 125
+S M + +KT TGKTIT E ++K ++ DK+GV
Sbjct: 55 DSKTMLLSVKTSTGKTITVEAP-----KNVKTEVRDKQGV 89
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = -3
Query: 226 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQ 47
+F+KTL +T+ E E V +KQKI EG+P ++QRL +AG+QLEDS D I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDS----DCGID 56
Query: 46 KESTLHMVLRL 14
E+T+++ L L
Sbjct: 57 SEATIYVNLEL 67
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = -3
Query: 226 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQ 47
+F+KTL +T+ E E V +KQKI EG+P ++QRL +AG+QLEDS D I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDS----DCGID 56
Query: 46 KESTLHMVLRL 14
E+T+++ L L
Sbjct: 57 SEATIYVNLEL 67
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVP 122
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 55.6 bits (128), Expect = 4e-09
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = -3
Query: 235 KMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 56
+ QIF+K L G + + +TV D+K I + +P L F+GK+LED ++ DY
Sbjct: 153 EFQIFVKVL-GVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDY 211
Query: 55 NIQKESTLHMVLR 17
NIQK ST+ M R
Sbjct: 212 NIQKSSTITMYFR 224
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -3
Query: 202 KTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLED-SKTMADYNIQKESTLHM 26
K I E + ETV+ LK +I + V ++Q L+F G +L+D +KTM D I ++ + M
Sbjct: 32 KQIVVEMKDKETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKITM 91
Query: 25 VLRL 14
+++
Sbjct: 92 NVKM 95
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -3
Query: 226 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGK 89
+F+KTL +T+ E E V +KQKI EG+P ++QRL +A +
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 39.1 bits (87), Expect = 4e-04
Identities = 16/65 (24%), Positives = 39/65 (60%)
Frame = -3
Query: 211 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 32
+ G + + +++LKQ+I D+ G+PV +Q+L+ G ++D+ + A YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 31 HMVLR 17
++ ++
Sbjct: 644 YLQVK 648
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 39.1 bits (87), Expect = 4e-04
Identities = 16/65 (24%), Positives = 39/65 (60%)
Frame = -3
Query: 211 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 32
+ G + + +++LKQ+I D+ G+PV +Q+L+ G ++D+ + A YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 31 HMVLR 17
++ ++
Sbjct: 644 YLQVK 648
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 175 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 32
++T+ +K I V + R++ K LED T+A YNIQ+ STL
Sbjct: 192 SDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTL 239
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 35.1 bits (77), Expect = 0.007
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEG--VPVDQQRLIFAGKQLEDSKTMAD 59
+ + +TLT E +T+A++K +A ++G + Q+LI+ GK L+DS + +
Sbjct: 52 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGE 111
Query: 58 YNIQKESTLHMVLRLPRR 5
+S+ +V+ L +R
Sbjct: 112 VGF--DSSKFVVVMLSKR 127
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 34.3 bits (75), Expect = 0.012
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 214 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 56
++ G+ + E+V LK KI + G+P + L GK L D K +ADY
Sbjct: 149 SMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY 201
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 34.3 bits (75), Expect = 0.012
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -3
Query: 175 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 14
++T+ +K +I V + R++ GK LED ++A YNIQ+ + + + L
Sbjct: 215 SDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHL 268
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.027
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 175 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 32
++T+ +K +I G+ R K LED T+A YNI++ ST+
Sbjct: 181 SDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical
protein F39B2.10 protein.
Length = 402
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 220 IKTLTGKTITAETEPAETVADLKQKIADKEGVPV 119
I TL G+TI P E +A K+ EG+P+
Sbjct: 279 ISTLDGRTIFYRVLPGEVIAHADVKVIHNEGMPM 312
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 28.7 bits (61), Expect = 0.58
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQ-LEDSKTMADY 56
M + IKT TGK IT E + +K ++ DK+GV G Q +E T+ D
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQGVVFTVSYDKGTGNQIIEMEDTVQDV 55
Query: 55 NIQK 44
IQ+
Sbjct: 56 KIQE 59
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 235 KMQIFIKTLTGKTIT 191
++ +F+KT TGKTIT
Sbjct: 180 EIDVFVKTYTGKTIT 194
>AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical
protein F52C6.2 protein.
Length = 110
Score = 28.3 bits (60), Expect = 0.76
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQ-LEDSKTMADY 56
M + IKT TGKTIT E + +K ++ K+GV AG Q +E T+ D
Sbjct: 1 MLLSIKTSTGKTITVEAPKS-----VKTEVRYKQGVVFAVSYDKDAGNQIIEMEDTVQDV 55
Query: 55 NIQK 44
IQ+
Sbjct: 56 KIQE 59
>AL161712-22|CAO82055.1| 158|Caenorhabditis elegans Hypothetical
protein Y66D12A.16a protein.
Length = 158
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 203 QNHYRRNGTRRDGGRSQAKNXXXXXXXXRSTKTYLCGQTIGRFQNYGRLQYSKGIYSS-H 27
+ H+RRN TRRD A S +T C + F+ +Q+ K + + H
Sbjct: 90 KEHHRRNETRRDYRSISAVETVHETIKIESRRTVACEGNV-YFEETNVIQFPKNLPPNVH 148
Query: 26 GVTITEEG 3
+T + G
Sbjct: 149 VITAAQYG 156
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVP 122
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = -3
Query: 121 VDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 26
V+ L + G++L+D++++ YNI + +++
Sbjct: 124 VESFNLYYGGQKLQDNRSIGSYNIDQSREIYL 155
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVP 122
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>Z93396-7|CAL49449.1| 196|Caenorhabditis elegans Hypothetical
protein ZC15.10 protein.
Length = 196
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 2 YPPR*S*HHVKSRFLLNIVIGHSFGIFQLFARKD 103
+ PR + HHV SRFLL IF++ + D
Sbjct: 35 FVPRKNLHHVVSRFLLTSSTQFQCSIFEILLKID 68
>Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical
protein K08F4.5 protein.
Length = 215
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -3
Query: 244 NSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTM 65
+ K IKT T + TA PAE V + K++ KE VP ++ + E++K
Sbjct: 39 DKTKAMSAIKTTTMGSTTANMHPAEPVVEKKEE--PKEKVPEKKEEEKKDATKKEEAKEE 96
Query: 64 ADYNIQKE 41
+KE
Sbjct: 97 KKEEERKE 104
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
363, isoform b protein.
Length = 2692
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFA 95
+TLTG I ++EP A K + E P + QR++ A
Sbjct: 544 QTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
363, isoform a protein.
Length = 2695
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFA 95
+TLTG I ++EP A K + E P + QR++ A
Sbjct: 544 QTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 241 SVKMQIF-IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTM 65
+VK ++ +K L KTI E++ + V +L+ + K DQ++ I AG ++E +K
Sbjct: 25 NVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAG-EVEPTKEQ 83
Query: 64 AD 59
D
Sbjct: 84 ID 85
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 94 GKQLEDSKTMADYNIQKESTLHMVLRLPRRV 2
GK D +++ ++ Q+ T HM L RR+
Sbjct: 18 GKYFSDDESLREHRRQRHMTCHMCLLCNRRI 48
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 221 HQNIDGQNHYRRNGTRRDG 165
H+NI+G H NGT +G
Sbjct: 725 HRNINGHGHMNGNGTHTNG 743
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 228 KYSSKH*RAKPLPPKRNPQRRWPISSKKLPIKKVCP*INKD 106
K SK P PK+N Q + S KLP K P KD
Sbjct: 348 KTVSKALSHSPKSPKKNSQEKSAPPSPKLPPKTTAPTPTKD 388
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 94 GKQLEDSKTMADYNIQKESTLHMVLRLPRRV 2
GK D +++ ++ Q+ T HM L RR+
Sbjct: 18 GKYFSDDESLREHRRQRHMTCHMCLLCNRRI 48
>Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical
protein C06G8.4 protein.
Length = 318
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 140 GNFLLEIGHRLCGFRFGGNGFARQCFDEYLHFYT 241
G +L + + C G GF F YLHF+T
Sbjct: 70 GKSMLYVSYGYCSLL--GEGFCFNIFAAYLHFHT 101
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
F48E3.3 protein.
Length = 1493
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLED 77
+Q+ I + TGK++ E E + + D+EGV L+ + ++ ++
Sbjct: 1149 LQVVIDSFTGKSVRVRVEKREGMEERNLLSDDEEGVWSSLSNLVSSKEKTQE 1200
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK-E 41
+ LT A + ETV++L I D++ FA KQ++ TM D IQ
Sbjct: 298 QVLTASLHNAHAQLEETVSNLINVIQDQKKTLAKDIDNAFAAKQIQ--LTMVDKRIQSMA 355
Query: 40 STLHMVLRLPRRV 2
L + RR+
Sbjct: 356 DKLSQTIEFSRRL 368
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 217 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK-E 41
+ LT A + ETV++L I D++ FA KQ++ TM D IQ
Sbjct: 298 QVLTASLHNAHAQLEETVSNLINVIQDQKKTLAKDIDNAFAAKQIQ--LTMVDKRIQSMA 355
Query: 40 STLHMVLRLPRRV 2
L + RR+
Sbjct: 356 DKLSQTIEFSRRL 368
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 115 QQRLIFAGKQLEDSKTMADYNIQKESTL 32
QQ+L KQ+E+++ +A+ N+QK L
Sbjct: 1881 QQKLKTQKKQVEEAEELANLNLQKYKQL 1908
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 115 QQRLIFAGKQLEDSKTMADYNIQKESTL 32
QQ+L KQ+E+++ +A+ N+QK L
Sbjct: 1881 QQKLKTQKKQVEEAEELANLNLQKYKQL 1908
>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
protein C04G2.6 protein.
Length = 1029
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 167 RLCGFRFGGNGFARQCFDEYL 229
++ + GNG +Q FDEYL
Sbjct: 217 QMAAYESSGNGNEKQIFDEYL 237
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 190 AETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNI 50
A+ + V D +++I D +P R + AG+ + + + YN+
Sbjct: 842 AKNRIEDVVEDYEKQITDNVTIPAQFHRGLLAGRGAKIHELQSKYNV 888
>V01494-1|CAA24738.1| 91|Caenorhabditis elegans myosin heavy chain
protein.
Length = 91
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 115 QQRLIFAGKQLEDSKTMADYNIQKESTL 32
QQ+L KQ+E+++ +A+ N+QK L
Sbjct: 9 QQKLKTQKKQVEEAEELANLNLQKYKQL 36
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 115 QQRLIFAGKQLEDSKTMADYNIQKESTL 32
QQ+L KQ+E+++ +A+ N+QK L
Sbjct: 1884 QQKLKTQKKQVEEAEELANLNLQKYKQL 1911
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = -3
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
M + K T+T +T + +A+ K+K+ +G + IF L Y
Sbjct: 119 MPLIFKLYLNGTVTCDTATIDELANTKEKMYYPDGGSYWLFKSIFDNYSLSVKDPAMGYK 178
Query: 52 IQKESTLHMVL 20
+K S L +L
Sbjct: 179 RRKRSILSWLL 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,215,056
Number of Sequences: 27780
Number of extensions: 118008
Number of successful extensions: 378
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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