Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p04
         (854 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6Z471 Cluster: Putative uncharacterized protein P0430F...    39   0.18 
UniRef50_Q4UGP5 Cluster: Putative uncharacterized protein; n=1; ...    38   0.32 
UniRef50_Q7QBF9 Cluster: ENSANGP00000014700; n=1; Anopheles gamb...    37   0.56 
UniRef50_Q7K4P2 Cluster: LD30246p; n=2; Drosophila melanogaster|...    36   1.7  
UniRef50_Q4G0Z0 Cluster: Putative uncharacterized protein; n=3; ...    35   2.3  
UniRef50_Q60KY8 Cluster: Putative uncharacterized protein CBG238...    35   3.0  
UniRef50_Q54VS4 Cluster: PA14 domain-containing protein; n=1; Di...    35   3.0  
UniRef50_A5KDU3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_A2F851 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_A5UZG2 Cluster: Transcription-repair coupling factor; n...    34   5.3  
UniRef50_A7S951 Cluster: Predicted protein; n=1; Nematostella ve...    34   5.3  
UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa...    34   5.3  
UniRef50_Q8LNR1 Cluster: Putative uncharacterized protein OSJNBa...    33   6.9  
UniRef50_Q0BW90 Cluster: Thymidylate kinase; n=2; Acetobacterace...    33   9.2  
UniRef50_Q5ZBC2 Cluster: Putative uncharacterized protein B1085F...    33   9.2  
UniRef50_A5C4I6 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  

>UniRef50_Q6Z471 Cluster: Putative uncharacterized protein
           P0430F03.36; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0430F03.36 - Oryza sativa subsp. japonica (Rice)
          Length = 286

 Score = 38.7 bits (86), Expect = 0.18
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +2

Query: 101 PSVPTVASKRERCLAPTRLEPKRAPPTTSRHAPSRHHTIL 220
           P++P  A +RER +AP  L PKR    T RH  SR H  L
Sbjct: 73  PALPPAADRRERAVAPA-LHPKRRRRATHRHCRSRRHPSL 111


>UniRef50_Q4UGP5 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1500

 Score = 37.9 bits (84), Expect = 0.32
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -3

Query: 465 NNNFPTVSNIILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDA 286
           N  +  VS IIL+  V+FL Q +  + DEN S E +    SHH      +    N  +  
Sbjct: 243 NKIYNIVSEIILNLMVTFLSQILTVLADENYSLENVRRPISHHSTHFSHITHSSNKHKSL 302

Query: 285 PPSG 274
           P SG
Sbjct: 303 PYSG 306


>UniRef50_Q7QBF9 Cluster: ENSANGP00000014700; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000014700 - Anopheles gambiae
           str. PEST
          Length = 482

 Score = 37.1 bits (82), Expect = 0.56
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 111 RLSQAKES--DALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHHHLLT 266
           +L Q  ES  + L+Q   S N  L  HL ++PP +TP  ++  P L  HHH LT
Sbjct: 256 KLEQITESLIETLKQSTESGNK-LPLHLFSKPPTVTPVSSTQNPYL-AHHHFLT 307


>UniRef50_Q7K4P2 Cluster: LD30246p; n=2; Drosophila
           melanogaster|Rep: LD30246p - Drosophila melanogaster
           (Fruit fly)
          Length = 224

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = -3

Query: 630 YEIYCGHCLGQPEGSATVYNKTLTYFEIYCGHCLGQPEGSATGRICEDMLRKLSLNNNFP 451
           + ++C  C    +    V         + CG CLGQ        +C  +L+ + +N + P
Sbjct: 15  FRVHCNKCFRHRKTDPAVPFHLTQCRHVICGPCLGQSSLEKNCPLCGQVLKAIQINRDMP 74

Query: 450 TVSNIILHFCVSFLMQTIY 394
           T  ++  +F      Q IY
Sbjct: 75  T--SVANYFADPLRFQQIY 91


>UniRef50_Q4G0Z0 Cluster: Putative uncharacterized protein; n=3;
           Catarrhini|Rep: Putative uncharacterized protein - Homo
           sapiens (Human)
          Length = 603

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = +3

Query: 510 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 635
           +SP  ARD  RS S NK    C + +SP  ARD  RS S NK
Sbjct: 425 RSPYKARDRSRSRSPNKARD-CSRSRSPYKARDRSRSRSPNK 465



 Score = 33.1 bits (72), Expect = 9.2
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +3

Query: 510 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 635
           +SP  ARD  RS S NK   +  + +SP  ARD  RS S NK
Sbjct: 449 RSPYKARDRSRSRSPNKARDHS-RSRSPNKARDRSRSRSPNK 489


>UniRef50_Q60KY8 Cluster: Putative uncharacterized protein CBG23841;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG23841 - Caenorhabditis
           briggsae
          Length = 717

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 90  DVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPP---DITPSLTSLRPRLQ 245
           D+  + SR S++  S +L  R+ SP +PL+Q  A+ PP   D  PS +S    L+
Sbjct: 600 DLKKKSSRKSESPHSRSLSPRSGSPESPLRQVSASPPPPQNDAPPSRSSTESPLE 654


>UniRef50_Q54VS4 Cluster: PA14 domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: PA14 domain-containing
           protein - Dictyostelium discoideum AX4
          Length = 750

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -3

Query: 690 YTAVTVSGNLRAL---PLYTLAYYEIYCGHCLGQPEGSATVYNKTLTYFEI--YCGHCLG 526
           +TA T +  L+ +   PL T   Y++   +C  +  GS+   + TL  F +  YCG C G
Sbjct: 226 HTAETANIKLKDITNPPLQTNKIYDLDFFYCERRATGSSIQLSTTLEIFCVDDYCGVCNG 285

Query: 525 QPEGSATGRICED 487
                 T   CED
Sbjct: 286 DGTSCCTSSTCED 298


>UniRef50_A5KDU3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 747

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 387 GDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGG 238
           G E   EEG   G      +  P++   N  E+AP    AV E +D+ GG
Sbjct: 175 GQEEGQEEGQEEGQEEGQQEEQPVEQVANPDEEAPHDAPAVWEQNDEEGG 224


>UniRef50_A2F851 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 372

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 651 PLYTLAYYEIYCGHCLGQPEGSATVYNKTL 562
           P++ L Y   YC HC+G PEG +  +NKTL
Sbjct: 29  PIFNLCYSH-YCPHCVGLPEGFSN-FNKTL 56


>UniRef50_A5UZG2 Cluster: Transcription-repair coupling factor; n=2;
            Roseiflexus|Rep: Transcription-repair coupling factor -
            Roseiflexus sp. RS-1
          Length = 1265

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 132  SDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHHHLLTRPLLTAERP 293
            +DA+R   +SP AP Q      PP    S+ S RP ++    +L  PL+T + P
Sbjct: 1066 TDAMR---TSPGAPAQPSDGQTPPPARSSVPSRRPAVRVDEKVLISPLVTLDLP 1116


>UniRef50_A7S951 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 658

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 153 ASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHHHLLTRPLLTAERP 293
           A+ P    +  LATRPP  T    + RP L  H  L TRP L   +P
Sbjct: 580 ATRPPLATRPPLATRPPLATRPPLATRPPLATHPPLATRPPLATRQP 626


>UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa
           subunit, mitochondrial; n=3; Eukaryota|Rep:
           NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
           mitochondrial - Aspergillus terreus (strain NIH 2624)
          Length = 688

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 390 IGDENSSEE--GIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGV 235
           +  E+SSEE  GI +GS    +D    DG +  G D     EA  ED  D GGV
Sbjct: 452 VSGEDSSEEWGGIESGSDAGSEDFSQFDGLLAPGSDDEDGDEAASEDASD-GGV 504


>UniRef50_Q8LNR1 Cluster: Putative uncharacterized protein
           OSJNBa0042E19.25; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0042E19.25 - Oryza sativa subsp. japonica (Rice)
          Length = 313

 Score = 33.5 bits (73), Expect = 6.9
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
 Frame = -3

Query: 552 EIYCGHCLGQPEGSATGRICEDMLRKL-SLNNNFPTVSNIILHFCVSFLMQTIYFIG-DE 379
           E + G  LG+PE   T      +  ++    +    +S++ +      L     F G   
Sbjct: 195 EAWDGDELGEPEREMTTSSAASLAPRIWQAASPLLALSSLAIAVTRPALCHYFLFFGFSP 254

Query: 378 NSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSG---EAVLEDD 253
           +SS  G VAG    H D+  + G +  GED P  G   E  LEDD
Sbjct: 255 SSSALGSVAGELQAHSDVGMVAGVVTGGED-PDKGNPVETFLEDD 298


>UniRef50_Q0BW90 Cluster: Thymidylate kinase; n=2;
           Acetobacteraceae|Rep: Thymidylate kinase - Granulobacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
          Length = 679

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 375 SSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLED 256
           SSE G    ++H  DD VPL  P  A ++A PSG  ++ D
Sbjct: 515 SSETGAFYTTAHDADD-VPLTRPCTASDNAVPSGNGMMAD 553


>UniRef50_Q5ZBC2 Cluster: Putative uncharacterized protein
           B1085F01.37; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           B1085F01.37 - Oryza sativa subsp. japonica (Rice)
          Length = 226

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 95  ERPSVPTVASKRERCLAPTRLEPKRAPPTTSRHAPSR 205
           ERP +PT +S   RC  P R  P+  PP  S H P R
Sbjct: 50  ERPLLPTGSSLPRRCRRPPR--PRWIPPWRSGHRPGR 84


>UniRef50_A5C4I6 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 227

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +3

Query: 159 SPNAPLQQHLATRPPDITPSLTSLRPR--LQC---HHHLLTRPLLTAERPRP 299
           +P +PLQ+   TR P ITP  +S RP+  + C       ++ P+  +E PRP
Sbjct: 44  APPSPLQRRYQTRRPPITPRASSSRPKKSISCPLTKKARVSSPVEPSEPPRP 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,788,663
Number of Sequences: 1657284
Number of extensions: 16791232
Number of successful extensions: 52747
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 46624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52604
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)