Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p04
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 31 0.89
11_03_0078 - 9662677-9663642,9666589-9666747 31 1.2
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 30 2.0
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 30 2.7
02_05_0317 - 27848993-27849102,27849682-27849886 30 2.7
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 29 4.7
11_01_0412 + 3131673-3131903,3133192-3133971 29 6.2
08_01_0177 + 1504472-1505033,1505035-1506647 29 6.2
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 6.2
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 28 8.3
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 8.3
01_04_0067 + 15675138-15675935 28 8.3
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 390 IGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +E +EE + H +D VPL +N E+ P E +ED ++G
Sbjct: 311 VREEVHAEENVPLREEVHAEDNVPLREEVNVEENVPVREEGDVEDGREVG 360
>11_03_0078 - 9662677-9663642,9666589-9666747
Length = 374
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 390 IGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +E +EE + H +D VPL +N E+ P E +ED ++G
Sbjct: 222 VREEVHAEENVPLREEVHVEDNVPLREEVNVEENVPVREEGDVEDGREVG 271
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 402 TIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEA 268
T+ GD+N + E A + D+ + +DG I AG+ +G+A
Sbjct: 238 TVGLSGDDNVANEAAAAAAGGADDEDLKMDGVITAGDKDVENGKA 282
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 399 LFALKMTHRNAILCC*PLGSCCSVTISVACLHKFFQWQS 515
LFA + + ++ C LG ++ +SV + + FQWQS
Sbjct: 744 LFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQS 782
>02_05_0317 - 27848993-27849102,27849682-27849886
Length = 104
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 102 RPSRLSQAKESDALRQRASSPNAPL 176
R SR AKE DA ++RAS P +PL
Sbjct: 31 RSSRPRSAKEEDAKKRRASQPPSPL 55
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 558 KLMSYCIQWQSPQVARDSDRSISHNKLMY----TVAEPSGCPR 674
KL+S CI++ PQ D + I K MY + + SG PR
Sbjct: 236 KLLSQCIKYLGPQEREDYEVVIEDGKFMYKNSREILDTSGGPR 278
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 651 PLY-TLAYYEIYCGHCLGQPEGSATVYNKTLTYFEIYCGHCLG 526
PL+ TLAY + C HCL +GS + EI C C G
Sbjct: 85 PLFATLAYAPVICTHCL--HDGSEQNEDNDENEVEIICNTCNG 125
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 357 VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDD 250
V H +DD P++ P + G P GEA D +
Sbjct: 211 VTEEGHAYDDNEPVESPASRGGGEPGGGEAAANDGE 246
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 495 KFFQWQSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNKLMYTVAEPSGCPR 674
KFFQ + S R + K+ SY Q Q+ + DSD+ K + + P
Sbjct: 484 KFFQSHHATANKVSQRPAKKQKISSYSDQMQNGNASSDSDKEQDLTKYYASATALANSPE 543
Query: 675 Q 677
+
Sbjct: 544 E 544
>12_01_0672 +
5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 81 LCNDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDI 209
LC+ +P++ ++ L +++ S N PL Q + T DI
Sbjct: 829 LCSQATRQPAKGKSENDASDLIEKSESENGPLPQQVQTENTDI 871
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 399 LFALKMTHRNAILCC*PLGSCCSVTISVACLHKFFQWQS 515
LFA + + I+ C LG + +S+ L + +QWQS
Sbjct: 612 LFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQS 650
>01_04_0067 + 15675138-15675935
Length = 265
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +3
Query: 102 RPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPS-----LTSLRPRLQCHHHLLT 266
RPS++ + E D + + +L TP+ L LRPRL+ H
Sbjct: 28 RPSKVKEEVEEDGMVVDPPDDASEASDNLRATGFQDTPTVGELVLRHLRPRLRGFHCADG 87
Query: 267 RPLLTAERPRPH**VRLEVLCRHGGVMNRRQ 359
+ R P L+++ RHGG +RR+
Sbjct: 88 DVPVIGVRDDPAAAAPLDLVARHGGAADRRR 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,148,329
Number of Sequences: 37544
Number of extensions: 494649
Number of successful extensions: 1680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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