Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p04
(854 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for IM... 35 0.33
BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing ... 33 1.7
AL365495-4|CAI13299.1| 450|Homo sapiens novel protein (FLJ10210... 33 1.7
AL365495-2|CAI13297.1| 525|Homo sapiens novel protein (FLJ10210... 33 1.7
AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210... 33 1.7
AL157392-7|CAI13129.1| 450|Homo sapiens novel protein (FLJ10210... 33 1.7
AL157392-6|CAI13128.1| 525|Homo sapiens novel protein (FLJ10210... 33 1.7
AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210... 33 1.7
AK001072-1|BAA91492.1| 450|Homo sapiens protein ( Homo sapiens ... 33 1.7
AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein. 33 1.7
U84004-2|AAC23441.1| 494|Homo sapiens bridging integrator prote... 31 7.1
U84004-1|AAC23440.1| 497|Homo sapiens bridging integrator prote... 31 7.1
U68485-1|AAC17461.1| 454|Homo sapiens bridging integrator prote... 31 7.1
AF068918-1|AAC23751.1| 497|Homo sapiens bridging-integrator pro... 31 7.1
AF068916-1|AAC24128.1| 424|Homo sapiens bridging-integrator pro... 31 7.1
DQ336129-1|ABC61880.1| 141|Homo sapiens SPANX-N3 locus variant ... 30 9.3
DQ336128-1|ABC61879.1| 141|Homo sapiens SPANX-N3 locus variant ... 30 9.3
BC062750-1|AAH62750.1| 141|Homo sapiens SPANX family, member N3... 30 9.3
AY825031-1|AAV97587.1| 141|Homo sapiens SPANX-N3 protein. 30 9.3
AL080239-1|CAI41648.1| 141|Homo sapiens novel protein similar t... 30 9.3
AL030997-1|CAI42274.1| 141|Homo sapiens novel protein similar t... 30 9.3
>BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for
IMAGE:4824581) protein.
Length = 603
Score = 35.1 bits (77), Expect = 0.33
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +3
Query: 510 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 635
+SP ARD RS S NK C + +SP ARD RS S NK
Sbjct: 425 RSPYKARDRSRSRSPNKARD-CSRSRSPYKARDRSRSRSPNK 465
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 510 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 635
+SP ARD RS S NK + + +SP ARD RS S NK
Sbjct: 449 RSPYKARDRSRSRSPNKARDHS-RSRSPNKARDRSRSRSPNK 489
>BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing 4A
protein.
Length = 1039
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 69 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 128
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 129 ELIDVDSEV 137
>AL365495-4|CAI13299.1| 450|Homo sapiens novel protein (FLJ10210)
protein.
Length = 450
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 85 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 144
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 145 ELIDVDSEV 153
>AL365495-2|CAI13297.1| 525|Homo sapiens novel protein (FLJ10210)
protein.
Length = 525
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 102 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 161
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 162 ELIDVDSEV 170
>AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 69 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 128
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 129 ELIDVDSEV 137
>AL157392-7|CAI13129.1| 450|Homo sapiens novel protein (FLJ10210)
protein.
Length = 450
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 85 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 144
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 145 ELIDVDSEV 153
>AL157392-6|CAI13128.1| 525|Homo sapiens novel protein (FLJ10210)
protein.
Length = 525
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 102 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 161
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 162 ELIDVDSEV 170
>AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 69 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 128
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 129 ELIDVDSEV 137
>AK001072-1|BAA91492.1| 450|Homo sapiens protein ( Homo sapiens
cDNA FLJ10210 fis, clone HEMBA1006344, weakly similar to
RADIXIN. ).
Length = 450
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 85 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 144
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 145 ELIDVDSEV 153
>AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein.
Length = 1051
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 507 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 331
TG + L + L ++FP S ++L+FCV F +++I ++ D + E + S +
Sbjct: 81 TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 140
Query: 330 DIVPLDGPI 304
+++ +D +
Sbjct: 141 ELIDVDSEV 149
>U84004-2|AAC23441.1| 494|Homo sapiens bridging integrator
protein-1 protein.
Length = 494
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 87 NDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHH 254
N V+ ++K LR++ +S NAP + + + PPD +P+ T P ++ +H
Sbjct: 243 NTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSPAAT---PEIRVNH 295
>U84004-1|AAC23440.1| 497|Homo sapiens bridging integrator
protein-1 protein.
Length = 497
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 87 NDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHH 254
N V+ ++K LR++ +S NAP + + + PPD +P+ T P ++ +H
Sbjct: 246 NTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSPAAT---PEIRVNH 298
>U68485-1|AAC17461.1| 454|Homo sapiens bridging integrator
protein-1 protein.
Length = 454
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 87 NDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHH 254
N V+ ++K LR++ +S NAP + + + PPD +P+ T P ++ +H
Sbjct: 246 NTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSPAAT---PEIRVNH 298
>AF068918-1|AAC23751.1| 497|Homo sapiens bridging-integrator
protein-1 isoform BIN1+12A protein.
Length = 497
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 87 NDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHH 254
N V+ ++K LR++ +S NAP + + + PPD +P+ T P ++ +H
Sbjct: 246 NTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSPAAT---PEIRVNH 298
>AF068916-1|AAC24128.1| 424|Homo sapiens bridging-integrator
protein-1 isoform BIN1-13 protein.
Length = 424
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 87 NDVNVRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQCHH 254
N V+ ++K LR++ +S NAP + + + PPD +P+ T P ++ +H
Sbjct: 246 NTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSPAAT---PEIRVNH 298
>DQ336129-1|ABC61880.1| 141|Homo sapiens SPANX-N3 locus variant 2
protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
>DQ336128-1|ABC61879.1| 141|Homo sapiens SPANX-N3 locus variant 1
protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
>BC062750-1|AAH62750.1| 141|Homo sapiens SPANX family, member N3
protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
>AY825031-1|AAV97587.1| 141|Homo sapiens SPANX-N3 protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
>AL080239-1|CAI41648.1| 141|Homo sapiens novel protein similar to
SPANX N member 2 protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
>AL030997-1|CAI42274.1| 141|Homo sapiens novel protein similar to
SPANX N member 2 protein.
Length = 141
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 381 ENSSEEGI--VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 241
+ +EG+ GSS+ +D+ P +GP +D S E ++D+D+G
Sbjct: 82 QKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDL-DSSEGSSQEDEDLG 129
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,548,464
Number of Sequences: 237096
Number of extensions: 2575444
Number of successful extensions: 6774
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6765
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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