Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p04
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    32   0.60 
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        30   1.8  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   9.7  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   9.7  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    28   9.7  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 99   VRPSRLSQAKESDALRQRASSPNAPLQQHLATRPPDITPSLTSLRPRLQ-CHHHLLTR 269
            V+ +R++ AK+S+    +      P+ +  AT PP ITP   S+RP  Q  H   LT+
Sbjct: 2937 VQLTRMAAAKKSEQKEYKT-----PVAKPKATAPPPITPKAASIRPATQKLHESELTK 2989


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 177  QQHL-ATRPPDITPSLTSLRPRLQCHHHLLTRPLLTAERPRP 299
            +QH+ A +P + TPS++SL P++Q  HHL   PLL + +  P
Sbjct: 1403 EQHVKAHQPLESTPSVSSL-PQMQ--HHLQQAPLLPSHQMMP 1441


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 177  QQHL-ATRPPDITPSLTSLRPRLQCHHHLLTRPLLTAERPRP 299
            +QH+ A +P + TPS++SL P++Q  HHL   PLL + +  P
Sbjct: 1401 EQHVKAHQPLESTPSVSSL-PQMQ--HHLQQAPLLPSHQMMP 1439


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 177  QQHL-ATRPPDITPSLTSLRPRLQCHHHLLTRPLLTAERPRP 299
            +QH+ A +P + TPS++SL P++Q  HHL   PLL + +  P
Sbjct: 1401 EQHVKAHQPLESTPSVSSL-PQMQ--HHLQQAPLLPSHQMMP 1439


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 278 DGGASSPALIGPSRGTMSSWWCDEPA-TIPSSELFSSPIK*IVCIKNDTQKCNIMLLT 448
           DG A  PA++ P R T S W     A  I  SE     +  I+ I ++ +KC +M  T
Sbjct: 764 DGCALLPAIMSPMRLTPSGWQSSLSAFRIDGSEQID--VVCIISICDENKKCPLMACT 819


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -3

Query: 378 NSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSG 274
           N    G VA S        P  GP+N  ED  PSG
Sbjct: 86  NEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSG 120


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 197  ARGEMLLEGRVWARGALAQGIALFCLRQSGRTDVHIVAQSLY 72
            A GE+  + ++   G+  Q IALF LRQ      H+ ++ L+
Sbjct: 1621 ADGELRKKAKMRIMGSQLQTIALFILRQMNLVPEHVESRPLF 1662


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 197  ARGEMLLEGRVWARGALAQGIALFCLRQSGRTDVHIVAQSLY 72
            A GE+  + ++   G+  Q IALF LRQ      H+ ++ L+
Sbjct: 1621 ADGELRKKAKMRIMGSQLQTIALFILRQMNLVPEHVESRPLF 1662


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 111 RLSQAKESDALRQRASSPNAPLQQHLATR 197
           +++ AK+    RQR + P+APL +H+ +R
Sbjct: 802 QINLAKKQQKQRQRQNVPSAPLDKHVNSR 830


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,459,577
Number of Sequences: 27780
Number of extensions: 402631
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)