Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p04
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                30   0.024
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   8.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 97  TSVRPDCRKQKRAMPCANAPRAQ--TRPSNNISPRALP 204
           TSV P CR+Q+  +  AN   A+    PS+  SP ++P
Sbjct: 95  TSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIP 132


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 702 ANVYSGRXLRLPETVTAXYLIIS*CIQWXXPSGXPEN 812
           A  +    LRLPE +T+ Y ++   + W      P++
Sbjct: 89  AQTWKDNRLRLPENMTSEYRLLE--VDWLKNMWRPDS 123



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 635 ANVYSGRALRLPETVTAVYLIIS*CIQW 718
           A  +    LRLPE +T+ Y ++   + W
Sbjct: 89  AQTWKDNRLRLPENMTSEYRLLE--VDW 114


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 128 RERCLAPTRLEPKRAPPTTSRHAP 199
           R RC+ P    P+  PP   R  P
Sbjct: 147 RFRCIGPPTPFPRFIPPNAYRFRP 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,881
Number of Sequences: 438
Number of extensions: 5108
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)