Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p02
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    96   2e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    95   5e-21
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    92   4e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   1.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   3.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.6  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 40/69 (57%), Positives = 60/69 (86%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           M+Y+AAYLL  +GGK +P A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 199 KLSSMPVGG 173
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 95.1 bits (226), Expect = 5e-21
 Identities = 41/69 (59%), Positives = 60/69 (86%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           M+Y+AAYLL  +GGK +P A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 199 KLSSMPVGG 173
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 38/69 (55%), Positives = 60/69 (86%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           M+Y+AAYLL  +GGK +P A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 199 KLSSMPVGG 173
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 243 SSVITFLSFSASASIP--TELRIFSTSAAXGVVLPPSTASKYAAT 371
           SSV T LS SAS+SIP  +     STS +   V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +3

Query: 195 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTASKYA 365
           SF+ PA+ S  TSL  SS     S SAS +  +   + S+S+A     P S++S +A
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 195 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTAS 356
           SF  P+A +   S P+SS+ +F + SA+++ P+   + ST +       PS  S
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSP-AVSSTFSFNAPTTTPSATS 503


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 228 TSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTASKY 362
           + L + S  T +S S+  S+PT+  +  T +    V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 213 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTAS 356
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 313  VEKILSSVGIEADAEKLKKVITELNG 236
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 384 KKCVTWPRIYWLCWV 340
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 228 TSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTASKYAAT 371
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 177 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRIFSTSAAXGVVLPPS 347
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 348 TASKYAAT 371
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAXGVVL 338
           PPP     SFS    I+ ++ +P SS  T  +    ++ S+ +P+ + I S S +   VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 339 PPS 347
           P S
Sbjct: 246 PTS 248


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 246 SVITFLSFSASA---SIPTELRIFSTSAAXGVVLPPSTAS 356
           S++  LSFS++    S+P++L+ F+ +++    + P TAS
Sbjct: 124 SLLALLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTAS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,730
Number of Sequences: 5004
Number of extensions: 18681
Number of successful extensions: 81
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)