Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p02
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 92 2e-19
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 79 1e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 79 2e-15
07_01_1001 - 8460467-8460799 65 3e-11
07_03_0321 + 16757414-16757743 63 1e-10
01_06_0098 - 26416768-26416998 32 0.26
12_01_0090 + 717524-719080 29 2.5
11_06_0264 - 21785450-21786928 27 5.7
06_03_0854 + 25400855-25403741,25406174-25407708 27 5.7
05_02_0121 - 6834843-6835127 27 7.5
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 27 10.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 10.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 27 10.0
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 27 10.0
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/70 (58%), Positives = 58/70 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
M+ +AAYLLAVLGG T+P A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 199 KLSSMPVGGG 170
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 79.4 bits (187), Expect = 1e-15
Identities = 34/71 (47%), Positives = 52/71 (73%)
Frame = -3
Query: 382 KMRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 203
+M++++AYLLA L G P A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 202 EKLSSMPVGGG 170
EK +S+P GGG
Sbjct: 253 EKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 78.6 bits (185), Expect = 2e-15
Identities = 33/70 (47%), Positives = 53/70 (75%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 199 KLSSMPVGGG 170
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 199 KLSSMPVG 176
L+ VG
Sbjct: 61 MLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 199 KLS 191
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 328 PXAADVEKILSSVGIEADAEKLKKVITELNGKD 230
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 174 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 308
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTE 296
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 284
PPP I + A +S P+S+V + L+ SASA+
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA 1157
>05_02_0121 - 6834843-6835127
Length = 94
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 286 IEADAEKLKKVITELNGKDVEQLIAAGREK 197
+EADA + K V+ L GKD A+ E+
Sbjct: 17 VEADAAEFKSVVQSLTGKDSTAATASPEEE 46
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 337 KTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIA 212
KTT E +L+ + D +K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 425 LFFRHYTFRVN*DLKNALRGRVFTGCAGWQD 333
+ HY ++V K+ GRV T A WQD
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQD 531
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +2
Query: 233 LAVELSDYFLKLLSVSFDTDGAEDLLNVSGXWRSLATQHSQ*IRGHVTHFLSPN*HETCN 412
L EL DY LK VS + G N++ WR+ + + R N + C+
Sbjct: 1035 LCEELLDYILKNHQVSQEPKGILHAFNIALCWRAASLLKHKINRRESLALSVRNLNYECD 1094
Query: 413 AERITFVLNKRQQVRKK 463
+V K + ++KK
Sbjct: 1095 EVLAEYVYEKLRILKKK 1111
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 298 SSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 179
+ VG D+EKL+ ELN + +E L+A K+ +PV
Sbjct: 426 TGVGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPV 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,922,075
Number of Sequences: 37544
Number of extensions: 125624
Number of successful extensions: 359
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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