Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13p02
(468 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 95 1e-19
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 95 1e-19
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 95 1e-19
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 95 1e-19
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 95 1e-19
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 95 1e-19
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 95 1e-19
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 95 1e-19
U33839-1|AAA75594.1| 264|Homo sapiens potassium channel protein. 29 6.1
BC009431-1|AAH09431.1| 559|Homo sapiens family with sequence si... 29 8.0
AY358207-1|AAQ88574.1| 559|Homo sapiens WTNF5791 protein. 29 8.0
AK054664-1|BAB70787.1| 559|Homo sapiens protein ( Homo sapiens ... 29 8.0
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 95.1 bits (226), Expect = 1e-19
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = -3
Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
MRYVA+YLLA LGG ++P A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 199 KLSSMPVGG 173
KL+S+P GG
Sbjct: 61 KLASVPAGG 69
>U33839-1|AAA75594.1| 264|Homo sapiens potassium channel protein.
Length = 264
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 DDSFSRPAAISCSTSLPLSSVITF-LSFSASASIPTELRIFSTSA 320
D RP AISC ++ SS I + + F S+ +P ++ ST+A
Sbjct: 126 DSGGIRPCAISCDKNVTTSSAICWHMGFWLSSILPASGKLVSTTA 170
>BC009431-1|AAH09431.1| 559|Homo sapiens family with sequence
similarity 55, member C protein.
Length = 559
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 406 RFVSIRT*KMRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKV 254
RF ++ + ++ YVA L ++GGK T A V S+ +E +L+ +
Sbjct: 413 RFTTVFSNELHYVANELNGIVGGKNTVVAIAVWSHFSTFPLEVYIRRLRNI 463
>AY358207-1|AAQ88574.1| 559|Homo sapiens WTNF5791 protein.
Length = 559
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 406 RFVSIRT*KMRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKV 254
RF ++ + ++ YVA L ++GGK T A V S+ +E +L+ +
Sbjct: 413 RFTTVFSNELHYVANELNGIVGGKNTVVAIAVWSHFSTFPLEVYIRRLRNI 463
>AK054664-1|BAB70787.1| 559|Homo sapiens protein ( Homo sapiens
cDNA FLJ30102 fis, clone BNGH41000137, weakly similar to
BRUSH BORDER 61.9 KD PROTEIN PRECURSOR. ).
Length = 559
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 406 RFVSIRT*KMRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKV 254
RF ++ + ++ YVA L ++GGK T A V S+ +E +L+ +
Sbjct: 413 RFTTVFSNELHYVANELNGIVGGKNTVVAIAVWSHFSTFPLEVYIRRLRNI 463
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,734,958
Number of Sequences: 237096
Number of extensions: 671655
Number of successful extensions: 1537
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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