Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p02
         (468 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein prot...   107   7e-24
AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB...   107   7e-24
AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA...   107   7e-24
X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal pr...   107   1e-23
AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p pro...   107   1e-23
AY069572-1|AAL39717.1|  510|Drosophila melanogaster LD31122p pro...    29   3.1  
AY060416-1|AAL25455.1|  358|Drosophila melanogaster LD37618p pro...    29   3.1  
AE014297-3702|AAF56388.3|  977|Drosophila melanogaster CG11819-P...    29   3.1  
AE014296-2923|AAF49329.1|  680|Drosophila melanogaster CG6311-PB...    29   3.1  
AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p pro...    29   4.1  
AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB...    29   4.1  
AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-P...    28   5.5  
AE013599-3680|AAF47056.1|  157|Drosophila melanogaster CG12491-P...    28   7.2  
AE013599-3679|ABI31112.1|  157|Drosophila melanogaster CG34105-P...    28   7.2  

>X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein
           protein.
          Length = 113

 Score =  107 bits (257), Expect = 7e-24
 Identities = 52/70 (74%), Positives = 59/70 (84%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYVAAYLLAVLGGK +P  +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60

Query: 199 KLSSMPVGGG 170
           KLSSMPVGGG
Sbjct: 61  KLSSMPVGGG 70


>AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB,
           isoform B protein.
          Length = 113

 Score =  107 bits (257), Expect = 7e-24
 Identities = 52/70 (74%), Positives = 59/70 (84%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYVAAYLLAVLGGK +P  +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60

Query: 199 KLSSMPVGGG 170
           KLSSMPVGGG
Sbjct: 61  KLSSMPVGGG 70


>AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA,
           isoform A protein.
          Length = 113

 Score =  107 bits (257), Expect = 7e-24
 Identities = 52/70 (74%), Positives = 59/70 (84%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYVAAYLLAVLGGK +P  +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60

Query: 199 KLSSMPVGGG 170
           KLSSMPVGGG
Sbjct: 61  KLSSMPVGGG 70


>X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal
           protein protein.
          Length = 113

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYVAAYLLAVLGGK +P   D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60

Query: 199 KLSSMPVGGG 170
           KLSSMPVGGG
Sbjct: 61  KLSSMPVGGG 70


>AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p
           protein.
          Length = 113

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYVAAYLLAVLGGK +P   D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60

Query: 199 KLSSMPVGGG 170
           KLSSMPVGGG
Sbjct: 61  KLSSMPVGGG 70


>AY069572-1|AAL39717.1|  510|Drosophila melanogaster LD31122p
           protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAA 323
           PPP GI++   + + +     LPL+ + T  + S+S++  T   I STSAA
Sbjct: 412 PPPCGINEVAIKYSILPI---LPLNGISTATTSSSSSAAATPTPIASTSAA 459


>AY060416-1|AAL25455.1|  358|Drosophila melanogaster LD37618p
           protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAA 323
           PPP GI++   + + +     LPL+ + T  + S+S++  T   I STSAA
Sbjct: 260 PPPCGINEVAIKYSILPI---LPLNGISTATTSSSSSAAATPTPIASTSAA 307


>AE014297-3702|AAF56388.3|  977|Drosophila melanogaster CG11819-PA
           protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 313 VEKILSSVGIEADAEKLKKV-ITELNGKDVEQLIAAGREKLSSMPVGG 173
           V KIL   G++  ++ +K++ +T  +GK   +LI      L S+PV G
Sbjct: 247 VNKILDVKGVKGLSKLMKEIAVTASSGKHDNELIGRAAITLKSIPVSG 294


>AE014296-2923|AAF49329.1|  680|Drosophila melanogaster CG6311-PB
           protein.
          Length = 680

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 171 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAA 323
           PPP GI++   + + +     LPL+ + T  + S+S++  T   I STSAA
Sbjct: 582 PPPCGINEVAIKYSILPI---LPLNGISTATTSSSSSAAATPTPIASTSAA 629


>AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 358 LLAVLGGKTTPXAADVEKILSSVGIEADAEK 266
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 358 LLAVLGGKTTPXAADVEKILSSVGIEADAEK 266
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-PA
           protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 207 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLP 341
           P   S   +L   +V TF++ + S + PT + ++ T +   +V+P
Sbjct: 154 PIPTSTMATLQAQTVATFIAATGSKNRPTTIVVYPTVSPESIVIP 198


>AE013599-3680|AAF47056.1|  157|Drosophila melanogaster CG12491-PA
           protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 195 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTAS 356
           S S P++ S STS P S+  T  S S  +S  +     STS+       PST+S
Sbjct: 47  SSSTPSS-SSSTSTPSSNSTTSTSSSTPSSSSSTSPTSSTSSTTATTTAPSTSS 99


>AE013599-3679|ABI31112.1|  157|Drosophila melanogaster CG34105-PA
           protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 195 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAXGVVLPPSTAS 356
           S S P++ S STS P S+  T  S S  +S  +     STS+       PST+S
Sbjct: 47  SSSTPSS-SSSTSTPSSNSTTSTSSSTPSSSSSTSPTSSTSSTTATTTAPSTSS 99


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,344
Number of Sequences: 53049
Number of extensions: 205698
Number of successful extensions: 580
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)