Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p02
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    76   1e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    74   6e-14
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    30   0.95 
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   6.7  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 38/68 (55%), Positives = 48/68 (70%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           MRYV+AYLLAVLGG   P   D++ ILS+VG++ADAE  K V++ L GK VE+LIA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 199 KLSSMPVG 176
            L S+  G
Sbjct: 61  GLVSVSGG 68


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 33/69 (47%), Positives = 46/69 (66%)
 Frame = -3

Query: 379 MRYVAAYLLAVLGGKTTPXAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 200
           M+Y+ AYLLA LGG  +P A DV K+L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 199 KLSSMPVGG 173
           KLSS+P GG
Sbjct: 61  KLSSVPSGG 69


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 334 TTPXAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 215
           +TP +A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 334 TTPXAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 215
           +TP +A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 450 C*RLFKTNVILSALHVSCQLGLKKCVTWPRIYWLC 346
           C   F+   +    H  CQ G  +CV  PR  W C
Sbjct: 41  CAAFFRRVFVTHKQHFKCQTGQNQCVPDPRGRWNC 75


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -3

Query: 295 SVGIEADAEKLKKVITELNGK---DVEQLI 215
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -3

Query: 295 SVGIEADAEKLKKVITELNGK---DVEQLI 215
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -3

Query: 295 SVGIEADAEKLKKVITELNGK---DVEQLI 215
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,467,611
Number of Sequences: 27780
Number of extensions: 104864
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)