Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o24
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    31   0.15 
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.46 
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   1.8  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   3.2  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 261 FKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKYPLKLN*VFAYNFACVEPLS 82
           F+  F     K+ +   K  +P E+D  ++   VL   K YPLKLN +F  + A     S
Sbjct: 204 FEKEFRPFFIKHQMSLSKYPSPNESDSFLD--EVLSTSKSYPLKLNDIFTPSDAVSSANS 261

Query: 81  YG 76
            G
Sbjct: 262 LG 263


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -1

Query: 536 CPRQVENALAPLNAWTWSTGKSMLRIQNGST-GPSSPEVRS---DTSSKPQGLGTTGK 375
           CP+Q+E ALA      +  G       N +T  P+   +RS    T S P  +G TGK
Sbjct: 409 CPQQIEEALASGITTMYGGGTGPSTGTNATTCTPNKDLIRSMLRSTDSYPMNIGLTGK 466


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 321 FLGASFISFVEIIYFVIERIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTH 163
           F  ASF+ FV  +   +E+I  S    S   N      K+ P   DRV E+TH
Sbjct: 332 FEDASFLGFVNGVGREMEKILISSI--SRLYNGTCHNNKTVPLTTDRVSEMTH 382


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/32 (25%), Positives = 22/32 (68%)
 Frame = -3

Query: 228 NNVVTVKKSNPYEADRVIELTHVLDVQKKYPL 133
           NN++ + +S+P+  D +++++ ++D Q  + L
Sbjct: 281 NNLLMLLRSHPFHIDTLLQVSEIIDQQGDHEL 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,608
Number of Sequences: 5004
Number of extensions: 57693
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)