Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o24
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0444 - 3502460-3502522,3502737-3502741,3502987-3503051,350...    31   0.62 
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    28   5.8  
05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,210...    28   5.8  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   5.8  
02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    28   5.8  
07_03_1033 - 23417749-23418012,23418027-23418137                       28   7.7  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    28   7.7  

>12_01_0444 -
           3502460-3502522,3502737-3502741,3502987-3503051,
           3503301-3503369,3503487-3503579,3503667-3503770,
           3503926-3504006,3504096-3504167,3504227-3504231,
           3505788-3505865,3506849-3506978,3507216-3507406,
           3507528-3507588,3507916-3508025,3508155-3508239
          Length = 403

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 266 LSITK*MISTKLIKLAPKNKPVAPPSDTIRSCK*KTISLLYRVLGAWMMYLIEPRVTKGP 445
           L + K  +S K IKLA   K     S+ IRSC  K++ +L+   G   + +  P + +  
Sbjct: 225 LPLLKSSLSIKNIKLAKYAKWFNDSSEDIRSCCDKSLQMLHAHYGWETLDVTIPEIEEMR 284

Query: 446 CSHFVSL 466
            +H+V++
Sbjct: 285 LAHYVTI 291


>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 432 TRGSIRYIIQAPRTRYNREIVFYLQDLIVSL 340
           T  S+R + + P TR  RE+V  LQ+L VS+
Sbjct: 274 TPPSVRSLFRNPCTRVAREVVKVLQELAVSI 304


>05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,
            2107120-2107645,2107817-2108090,2108197-2109056,
            2109201-2109467,2109711-2109974,2110063-2110356,
            2110455-2110814
          Length = 1276

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -2

Query: 391  SVQQGNCLLLTGPDSVTRRSHRFILGRQFYKLRGNHLLCDRKNIQEFV*GFLHQK 227
            ++Q G  + L G +S + +S    L ++FY     H+L D  +IQ+F   +L Q+
Sbjct: 1054 TIQSGKTVALVG-ESGSGKSTAISLLQRFYDPDAGHILLDGVDIQKFQLRWLRQQ 1107


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -2

Query: 421 DQIHHPSPKDSVQQGNCLLLTGPDSVTRRSHRF 323
           D IH  SP DS QQ N   LTG D        F
Sbjct: 807 DNIHSRSPFDSQQQKNLSKLTGHDEANAARKAF 839


>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 291 EIIYFVIERIFKSLFEDSSTKNNVVTV 211
           +I +FV+ER+F + F  + T++N+V +
Sbjct: 153 QIPFFVLERLFDTFFRGAVTQDNLVKI 179


>07_03_1033 - 23417749-23418012,23418027-23418137
          Length = 124

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 527 QVENALAPLNAWTWSTGKSMLRIQNG---STGPSSPEVRSD 414
           + EN +A L  W W +  S+    NG   + GP  PE+  D
Sbjct: 23  KAENGVAKLEIWHWKSFYSIALASNGVYVNHGPEVPELVGD 63


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 529  RGQEMGVSTQARHSCHRADRAFFVYVIKR 615
            RG+  G     RHS +  D AFF Y  KR
Sbjct: 1135 RGRRWGAKMPQRHSKNNNDLAFFTYEEKR 1163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,560,770
Number of Sequences: 37544
Number of extensions: 384743
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)