Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o24
(665 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF195025-1|AAF19818.1| 549|Homo sapiens acid sensing ion channe... 40 0.006
AF195024-1|AAF19817.1| 543|Homo sapiens acid sensing ion channe... 40 0.006
AF095897-1|AAC64188.1| 531|Homo sapiens proton-gated cation cha... 40 0.006
AF057711-1|AAC62935.1| 531|Homo sapiens proton-gated cation cha... 40 0.006
AB010575-1|BAA25897.1| 532|Homo sapiens sodium channel protein. 40 0.006
AJ252011-1|CAB85607.1| 505|Homo sapiens amiloride-sensitive sod... 35 0.23
BC073912-1|AAH73912.1| 296|Homo sapiens ACCN4 protein protein. 33 0.69
BC010439-1|AAH10439.1| 647|Homo sapiens amiloride-sensitive cat... 33 0.69
AJ408881-1|CAC51338.1| 539|Homo sapiens acid sensing ion channe... 33 0.69
AJ271643-1|CAB93980.1| 539|Homo sapiens putative acid-sensing i... 33 0.69
U57352-1|AAB49182.1| 512|Homo sapiens sodium channel 1 protein. 33 1.2
U53212-1|AAC50498.1| 512|Homo sapiens degenerin channel MDEG pr... 33 1.2
U50352-1|AAC50432.1| 512|Homo sapiens sodium channel 1 protein. 33 1.2
BC075043-1|AAH75043.1| 512|Homo sapiens amiloride-sensitive cat... 33 1.2
BC075042-1|AAH75042.1| 512|Homo sapiens amiloride-sensitive cat... 33 1.2
BC047916-1|AAH47916.1| 347|Homo sapiens SCUBE1 protein protein. 30 8.5
>AF195025-1|AAF19818.1| 549|Homo sapiens acid sensing ion channel 3
splice variant c protein.
Length = 549
Score = 40.3 bits (90), Expect = 0.006
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Frame = -3
Query: 663 RLSCRSKRAVELCGCRPFYYVNEEGPVCSVAGMACXXXXXXXXXXXXGKCSCTPQCLDMV 484
RL+C ++ CGCR Y+ + PVCS C+C C
Sbjct: 316 RLACETRYVARKCGCR-MVYMPGDVPVCSPQQYKNCAHPAIDAMLRKDSCACPNPCASTR 374
Query: 483 Y-REIN-VKDTKWEHGPFVTRGSIR---YIIQAPRT------RYNREIV-----FYLQDL 352
Y +E++ V+ F+ R R YI + N E V + + +L
Sbjct: 375 YAKELSMVRIPSRAAARFLARKLNRSEAYIAENVLALDIFFEALNYETVEQKKAYEMSEL 434
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIE 268
+ +GG GLF+GAS ++ +EI+ ++ E
Sbjct: 435 LGDIGGQMGLFIGASLLTILEILDYLCE 462
>AF195024-1|AAF19817.1| 543|Homo sapiens acid sensing ion channel 3
splice variant b protein.
Length = 543
Score = 40.3 bits (90), Expect = 0.006
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Frame = -3
Query: 663 RLSCRSKRAVELCGCRPFYYVNEEGPVCSVAGMACXXXXXXXXXXXXGKCSCTPQCLDMV 484
RL+C ++ CGCR Y+ + PVCS C+C C
Sbjct: 316 RLACETRYVARKCGCR-MVYMPGDVPVCSPQQYKNCAHPAIDAMLRKDSCACPNPCASTR 374
Query: 483 Y-REIN-VKDTKWEHGPFVTRGSIR---YIIQAPRT------RYNREIV-----FYLQDL 352
Y +E++ V+ F+ R R YI + N E V + + +L
Sbjct: 375 YAKELSMVRIPSRAAARFLARKLNRSEAYIAENVLALDIFFEALNYETVEQKKAYEMSEL 434
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIE 268
+ +GG GLF+GAS ++ +EI+ ++ E
Sbjct: 435 LGDIGGQMGLFIGASLLTILEILDYLCE 462
>AF095897-1|AAC64188.1| 531|Homo sapiens proton-gated cation
channel ASIC3 protein.
Length = 531
Score = 40.3 bits (90), Expect = 0.006
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Frame = -3
Query: 663 RLSCRSKRAVELCGCRPFYYVNEEGPVCSVAGMACXXXXXXXXXXXXGKCSCTPQCLDMV 484
RL+C ++ CGCR Y+ + PVCS C+C C
Sbjct: 316 RLACETRYVARKCGCR-MVYMPGDVPVCSPQQYKNCAHPAIDAMLRKDSCACPNPCASTR 374
Query: 483 Y-REIN-VKDTKWEHGPFVTRGSIR---YIIQAPRT------RYNREIV-----FYLQDL 352
Y +E++ V+ F+ R R YI + N E V + + +L
Sbjct: 375 YAKELSMVRIPSRAAARFLARKLNRSEAYIAENVLALDIFFEALNYETVEQKKAYEMSEL 434
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIE 268
+ +GG GLF+GAS ++ +EI+ ++ E
Sbjct: 435 LGDIGGQMGLFIGASLLTILEILDYLCE 462
>AF057711-1|AAC62935.1| 531|Homo sapiens proton-gated cation
channel subunit protein.
Length = 531
Score = 40.3 bits (90), Expect = 0.006
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Frame = -3
Query: 663 RLSCRSKRAVELCGCRPFYYVNEEGPVCSVAGMACXXXXXXXXXXXXGKCSCTPQCLDMV 484
RL+C ++ CGCR Y+ + PVCS C+C C
Sbjct: 316 RLACETRYVARKCGCR-MVYMPGDVPVCSPQQYKNCAHPAIDAILRKDSCACPNPCASTR 374
Query: 483 Y-REIN-VKDTKWEHGPFVTRGSIR---YIIQAPRT------RYNREIV-----FYLQDL 352
Y +E++ V+ F+ R R YI + N E V + + +L
Sbjct: 375 YAKELSMVRIPSRAAARFLARKLNRSEAYIAENVLALDIFFEALNYETVEQKKAYEMSEL 434
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIE 268
+ +GG GLF+GAS ++ +EI+ ++ E
Sbjct: 435 LGDIGGQMGLFIGASLLTILEILDYLCE 462
>AB010575-1|BAA25897.1| 532|Homo sapiens sodium channel protein.
Length = 532
Score = 40.3 bits (90), Expect = 0.006
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Frame = -3
Query: 663 RLSCRSKRAVELCGCRPFYYVNEEGPVCSVAGMACXXXXXXXXXXXXGKCSCTPQCLDMV 484
RL+C ++ CGCR Y+ + PVCS C+C C
Sbjct: 317 RLACETRYVARKCGCR-MVYMPGDVPVCSPQQYKNCAHPAIDAMLRKDSCACPNPCASTR 375
Query: 483 Y-REIN-VKDTKWEHGPFVTRGSIR---YIIQAPRT------RYNREIV-----FYLQDL 352
Y +E++ V+ F+ R R YI + N E V + + +L
Sbjct: 376 YAKELSMVRIPSRAAARFLARKFNRREAYIAENVLALDIFFEALNYETVEQKKAYEMSEL 435
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIE 268
+ +GG GLF+GAS ++ +EI+ ++ E
Sbjct: 436 LGDIGGQMGLFIGASLLTILEILDYLCE 463
>AJ252011-1|CAB85607.1| 505|Homo sapiens amiloride-sensitive sodium
channel protein.
Length = 505
Score = 35.1 bits (77), Expect = 0.23
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 363 LQDLIVSLGGATGLFLGASFISFVEIIYFVIERIF 259
+ +L+ LGG GLF GAS I+ +EII ++ +
Sbjct: 438 VSELLADLGGQLGLFCGASLITIIEIIEYLFTNFY 472
>BC073912-1|AAH73912.1| 296|Homo sapiens ACCN4 protein protein.
Length = 296
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 363 LQDLIVSLGGATGLFLGASFISFVEIIYFVIE 268
L L+ LGG GLF+GAS ++ +EI+ ++ E
Sbjct: 217 LSALLGDLGGQMGLFIGASILTLLEILDYIYE 248
>BC010439-1|AAH10439.1| 647|Homo sapiens amiloride-sensitive cation
channel 4, pituitary protein.
Length = 647
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 363 LQDLIVSLGGATGLFLGASFISFVEIIYFVIE 268
L L+ LGG GLF+GAS ++ +EI+ ++ E
Sbjct: 544 LSALLGDLGGQMGLFIGASILTLLEILDYIYE 575
>AJ408881-1|CAC51338.1| 539|Homo sapiens acid sensing ion channel 4
protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 363 LQDLIVSLGGATGLFLGASFISFVEIIYFVIE 268
L L+ LGG GLF+GAS ++ +EI+ ++ E
Sbjct: 436 LSALLGDLGGQMGLFIGASILTLLEILDYIYE 467
>AJ271643-1|CAB93980.1| 539|Homo sapiens putative acid-sensing ion
channel protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 363 LQDLIVSLGGATGLFLGASFISFVEIIYFVIE 268
L L+ LGG GLF+GAS ++ +EI+ ++ E
Sbjct: 436 LSALLGDLGGQMGLFIGASILTLLEILDYIYE 467
>U57352-1|AAB49182.1| 512|Homo sapiens sodium channel 1 protein.
Length = 512
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFE 244
L+ +GG GLF+GAS ++ +E+ ++ E I + L +
Sbjct: 428 LLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLD 464
>U53212-1|AAC50498.1| 512|Homo sapiens degenerin channel MDEG
protein.
Length = 512
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFE 244
L+ +GG GLF+GAS ++ +E+ ++ E I + L +
Sbjct: 428 LLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLD 464
>U50352-1|AAC50432.1| 512|Homo sapiens sodium channel 1 protein.
Length = 512
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFE 244
L+ +GG GLF+GAS ++ +E+ ++ E I + L +
Sbjct: 428 LLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLD 464
>BC075043-1|AAH75043.1| 512|Homo sapiens amiloride-sensitive cation
channel 1, neuronal (degenerin), isoform 2 protein.
Length = 512
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFE 244
L+ +GG GLF+GAS ++ +E+ ++ E I + L +
Sbjct: 428 LLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLD 464
>BC075042-1|AAH75042.1| 512|Homo sapiens amiloride-sensitive cation
channel 1, neuronal (degenerin) protein.
Length = 512
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFE 244
L+ +GG GLF+GAS ++ +E+ ++ E I + L +
Sbjct: 428 LLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLD 464
>BC047916-1|AAH47916.1| 347|Homo sapiens SCUBE1 protein protein.
Length = 347
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 657 SCRSKRAVELCGCRPFYYVNEEGPVCSVAG 568
+C+ + VELCGC Y+ +E P +AG
Sbjct: 309 TCKGQH-VELCGCPCLYWPGQEPPCACIAG 337
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,970,822
Number of Sequences: 237096
Number of extensions: 2096735
Number of successful extensions: 4363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4363
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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