Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o24
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 41 0.001
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 38 0.008
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 38 0.008
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 36 0.020
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 36 0.020
Z81017-13|CAB02674.2| 526|Caenorhabditis elegans Hypothetical p... 36 0.026
Z68005-5|CAA91993.2| 526|Caenorhabditis elegans Hypothetical pr... 36 0.026
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 35 0.045
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 35 0.045
U61948-5|AAB03149.2| 509|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 32 0.42
U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical pr... 30 1.3
U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical p... 30 1.3
AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical ... 30 1.7
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 29 2.2
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 29 2.2
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 29 2.2
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81057-4|CAB02918.1| 559|Caenorhabditis elegans Hypothetical pr... 28 5.2
CU457740-6|CAM36336.1| 365|Caenorhabditis elegans Hypothetical ... 28 6.8
L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor pr... 27 9.1
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 27 9.1
AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dau... 27 9.1
AF047651-11|AAO61443.1| 446|Caenorhabditis elegans Abnormal dau... 27 9.1
AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dau... 27 9.1
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 27/153 (17%)
Frame = -3
Query: 654 CRSKRAVELCGCRPFYYVNEEG-PVCS-VAGMACXXXXXXXXXXXXG------KCS-CTP 502
C++K +E CGC P Y NE C+ +AC +C+ C
Sbjct: 369 CKAKFFMENCGCTPAVYNNERNLKECTPFETLACVNNHNGSNNATGKLEFKLPRCAQCAQ 428
Query: 501 QCLDMVYREIN---------------VKDTKWEHGPFVTRGSIRYII--QAPRTRYNREI 373
QC +++YR N ++ W T I +I T YN+
Sbjct: 429 QCNNLIYRAFNSQGNQFSARAFEWFRTNNSNWTMAHIKTNFQIIHIFYQDMSNTEYNQVQ 488
Query: 372 VFYLQDLIVSLGGATGLFLGASFISFVEI-IYF 277
+ DL+ ++GG G+FLG S I+ EI +YF
Sbjct: 489 DASISDLLSNIGGNMGMFLGMSLITITEICLYF 521
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 40.7 bits (91), Expect = 0.001
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Frame = -3
Query: 393 TRYNREIVFYLQDLIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFEDSSTKNNVVT 214
T YN+ + DL+ ++GG G+FLG S I+ VE+ F ++F F S T+ N +
Sbjct: 486 TEYNQVQDASITDLLSAIGGNMGMFLGGSVITIVELFLF-FSKVFWIGF--SKTRRNYLY 542
Query: 213 VKKSNPYEADRVIELTHVLDVQKKYPLKLN*VFAYNFAC-VEPLSYGSNVLRTDSL*NFT 37
K++N E E+ ++ K + N + C PL S + + NF
Sbjct: 543 SKRAN--EKAHKKEVVETVEKMKVIASQGNLTSLSDATCATPPLKLSSPNKKVEFRINFE 600
Query: 36 GHTRSLSVECSE 1
L + SE
Sbjct: 601 DLASQLDFDSSE 612
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -3
Query: 387 YNREIVFYLQDLIVSLGGATGLFLGASFISFVEIIYFVIE 268
++++ + L +GGA GLFLGAS ++ +EI+Y I+
Sbjct: 726 WSQDRTYGFWSLACDIGGALGLFLGASLLTIIEIVYLCIQ 765
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 37.5 bits (83), Expect = 0.008
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Frame = -3
Query: 660 LSCRSKRAVELCGCRPFYY-VNEEGP---VCSVAGMA-CXXXXXXXXXXXXGKCSCTPQC 496
+ C+ ++ LCGC P Y E G +C+ + C +C C +C
Sbjct: 310 IDCKLRKVRNLCGCSPLAYSARESGSNDTICTPYQIQQCFRKVRGLDNRWEDECDCPSEC 369
Query: 495 -----------LDMVYREINVKDTKWEHGPFVTRGSIRYIIQAPRTRYNREIVFYLQDLI 349
D+ R + +K E ++ S+ Y R ++ DL+
Sbjct: 370 NMLEFDVTNSYSDLDGRSRGLSSSKVESD--ISHVSL-YFSHVAYERIEQQKQLQTADLL 426
Query: 348 VSLGGATGLFLGASFISFVEIIYFVIERIF 259
++ G+ GLFLG S ++ +EI ++ + ++
Sbjct: 427 SNIAGSMGLFLGMSTVTLLEIFIYLFKSVW 456
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 37.5 bits (83), Expect = 0.008
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Frame = -3
Query: 660 LSCRSKRAVELCGCRPFYY-VNEEGP---VCSVAGMA-CXXXXXXXXXXXXGKCSCTPQC 496
+ C+ ++ LCGC P Y E G +C+ + C +C C +C
Sbjct: 310 IDCKLRKVRNLCGCSPLAYSARESGSNDTICTPYQIQQCFRKVRGLDNRWEDECDCPSEC 369
Query: 495 -----------LDMVYREINVKDTKWEHGPFVTRGSIRYIIQAPRTRYNREIVFYLQDLI 349
D+ R + +K E ++ S+ Y R ++ DL+
Sbjct: 370 NMLEFDVTNSYSDLDGRSRGLSSSKVESD--ISHVSL-YFSHVAYERIEQQKQLQTADLL 426
Query: 348 VSLGGATGLFLGASFISFVEIIYFVIERIF 259
++ G+ GLFLG S ++ +EI ++ + ++
Sbjct: 427 SNIAGSMGLFLGMSTVTLLEIFIYLFKSVW 456
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFVIERI 262
+L+ +GG GLFLGAS +S +E ++F + +
Sbjct: 600 NLMADMGGQAGLFLGASIMSVIEFLFFAVRTL 631
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFVIERI 262
+L+ +GG GLFLGAS +S +E ++F + +
Sbjct: 600 NLMADMGGQAGLFLGASIMSVIEFLFFAVRTL 631
>Z81017-13|CAB02674.2| 526|Caenorhabditis elegans Hypothetical
protein F59F3.4 protein.
Length = 526
Score = 35.9 bits (79), Expect = 0.026
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = -3
Query: 510 CTPQCLDMVYREINVKDTKWEHGPFVTRGSIRYIIQAPRTRYNREIVFYLQDLIVSLGGA 331
C P C ++ Y+ K +T + I TR I D++ LGGA
Sbjct: 265 CYPSCSEIKYQVSKSKLRHSSDSVVITFSVLPTITLMQETRKTTLI-----DILCYLGGA 319
Query: 330 TGLFLGASFISFVEIIYFVIERIFKS 253
+ LF+G S ++ +E+ F+ + + KS
Sbjct: 320 SSLFMGCSCVTLMEMFVFLFKLVAKS 345
>Z68005-5|CAA91993.2| 526|Caenorhabditis elegans Hypothetical
protein F59F3.4 protein.
Length = 526
Score = 35.9 bits (79), Expect = 0.026
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = -3
Query: 510 CTPQCLDMVYREINVKDTKWEHGPFVTRGSIRYIIQAPRTRYNREIVFYLQDLIVSLGGA 331
C P C ++ Y+ K +T + I TR I D++ LGGA
Sbjct: 265 CYPSCSEIKYQVSKSKLRHSSDSVVITFSVLPTITLMQETRKTTLI-----DILCYLGGA 319
Query: 330 TGLFLGASFISFVEIIYFVIERIFKS 253
+ LF+G S ++ +E+ F+ + + KS
Sbjct: 320 SSLFMGCSCVTLMEMFVFLFKLVAKS 345
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 35.9 bits (79), Expect = 0.026
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 27/153 (17%)
Frame = -3
Query: 654 CRSKRAVELCGCRPFYYVNE---------EGPVCSVAGMACXXXXXXXXXXXXGKC-SCT 505
C++K +E CGC P Y E E C +A C +C
Sbjct: 384 CKAKFYMENCGCTPALYNIENNLKECTPYETTTCLDNILAKPNKETGKIEFQTPNCKACA 443
Query: 504 PQCLDMVYREINVKDTKWEHGPFV---------TRGSIRYIIQAPR--------TRYNRE 376
QC +VYR N +++ G F T G +R Q T YN+
Sbjct: 444 QQCNSLVYRAYNSYGSQFSAGAFHYLKSINPEWTDGHMRANFQMINIFYRDMSYTEYNQV 503
Query: 375 IVFYLQDLIVSLGGATGLFLGASFISFVEIIYF 277
+ L+ +GG G+FLG S I+ EI F
Sbjct: 504 QDASVTQLLSDIGGNMGMFLGMSVITITEICLF 536
>Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical
protein C27C12.5 protein.
Length = 480
Score = 35.5 bits (78), Expect = 0.034
Identities = 24/89 (26%), Positives = 37/89 (41%)
Frame = -3
Query: 516 CSCTPQCLDMVYREINVKDTKWEHGPFVTRGSIRYIIQAPRTRYNREIVFYLQDLIVSLG 337
C C QC Y V K + + +Y R F DL+ +G
Sbjct: 302 CDCPMQCYSQNYVLQPVSLLKSRSNISTVTFHLNSNLLRSHQQYKR---FKQIDLMSYIG 358
Query: 336 GATGLFLGASFISFVEIIYFVIERIFKSL 250
G GLFLG S ++ +E+ ++ + IF +L
Sbjct: 359 GVMGLFLGMSCVTLLEVFIYLFKTIFGTL 387
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 369 FYLQDLIVSLGGATGLFLGASFISFVEIIYFVI 271
+ L ++ LGG TGL++GAS +S +EI+ ++
Sbjct: 685 YTLTSVLADLGGLTGLWIGASVVSLLEIVTLIV 717
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 369 FYLQDLIVSLGGATGLFLGASFISFVEIIYFVI 271
+ L ++ LGG TGL++GAS +S +EI+ ++
Sbjct: 647 YTLTSVLADLGGLTGLWIGASVVSLLEIVTLIV 679
>U61948-5|AAB03149.2| 509|Caenorhabditis elegans Hypothetical
protein C46A5.2 protein.
Length = 509
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 351 IVSLGGATGLFLGASFISFVEIIYFVIERIFK 256
I LGG GLF+G+S +SFV++ V +I+K
Sbjct: 470 ISELGGQAGLFVGSSVMSFVQLFNSVFIQIYK 501
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 354 LIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLF 247
L+ +GG GL++GA+ ++ E + F+ ER ++F
Sbjct: 841 LLAEIGGTIGLYVGATLLTAAETLVFLCERKKSNIF 876
>U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical
protein C24G7.4 protein.
Length = 663
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -3
Query: 393 TRYNREIVFYLQDLIVSLGGATGLFLGASFISFVEIIYFVIERIFKSLFEDSSTKNNVVT 214
T Y++ L +++ +GG G+FLG S I+ E+ F +IF + S + +
Sbjct: 466 TSYSQVQATSLTEILSDIGGNMGMFLGMSVITITELSLF-FSKIFWIMV--SKRRRQYMY 522
Query: 213 VKKSNPYEADRVIE 172
KK++ E + ++
Sbjct: 523 SKKTHEKEKEHQLD 536
>U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical
protein F55G1.12 protein.
Length = 266
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 342 LGGATGLFLGASFISFVEIIYFVIERIFKSLF 247
LGG + +G S +SFVE+ + ++ I LF
Sbjct: 231 LGGILSILIGVSIVSFVELFFLFVQLIVILLF 262
>AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical
protein T28F2.7 protein.
Length = 684
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 393 TRYNREIVFYLQDLIVSLGGATGLFLGASFISFVEIIYFV 274
T Y ++ L +L+ +GG G+F+G S + +E+ F+
Sbjct: 500 TEYIQKRGMSLTELLSDIGGNMGMFMGMSVFTIIELFLFL 539
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFVIERIFKS 253
+L+ GG GL+ G SF++ E ++ +E + S
Sbjct: 440 NLLADFGGQLGLWCGISFLTCCEFVFLFLETAYMS 474
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFVIERIFKS 253
+L+ GG GL+ G SF++ E ++ +E + S
Sbjct: 710 NLLADFGGQLGLWCGISFLTCCEFVFLFLETAYMS 744
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFVIERIFKS 253
+L+ GG GL+ G SF++ E ++ +E + S
Sbjct: 710 NLLADFGGQLGLWCGISFLTCCEFVFLFLETAYMS 744
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 357 DLIVSLGGATGLFLGASFISFVEIIYFV 274
+ I +GG GLFLG S IS +E + +
Sbjct: 434 NFISDVGGQVGLFLGMSIISAIEYLVLI 461
>Z81057-4|CAB02918.1| 559|Caenorhabditis elegans Hypothetical
protein F10D11.5 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 212 TVTTLFLVEESSNKLLNILSITK*MISTKLIKLAPKNKPVAPPSDTI 352
+ +++ + +SN L +LS+ +S K + +AP+ V PP+ +
Sbjct: 432 STSSVLVPSTTSNALPPVLSLNSQSLSVKTLSMAPQVSQVEPPTSVM 478
>CU457740-6|CAM36336.1| 365|Caenorhabditis elegans Hypothetical
protein C50E10.6 protein.
Length = 365
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -3
Query: 288 IIYFVIERIFKSLFEDSST---KNNVVTVKKSNPYEADRVIELTHVLDVQKKYPLKLN*V 118
++ +V I KSL ST + N + PY D V + HV D+ + +PL + V
Sbjct: 71 VLSWVTSAIGKSLLTPYSTGALRLNNASTDLHKPYWTDDVARMVHVEDIGEAWPLFVGGV 130
Query: 117 FAYNF 103
+ +
Sbjct: 131 LTWYY 135
>L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor
protein.
Length = 744
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 267 RIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKYP 136
++FK+ + S + +V VKK N ++ + + D +YP
Sbjct: 319 KVFKAQYTPDSGEKRLVAVKKLNEFQKASFLAEKRIFDELNEYP 362
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -3
Query: 273 IERIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKY 139
+E K++F + K + KK ++ + + E+T +DV K +
Sbjct: 343 LETFLKNIFANLDAKGKLYQEKKLKTFDTETLKEITTFIDVMKHH 387
>AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform c protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 267 RIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKYP 136
++FK+ + S + +V VKK N ++ + + D +YP
Sbjct: 167 KVFKAQYTPDSGEKRLVAVKKLNEFQKASFLAEKRIFDELNEYP 210
>AF047651-11|AAO61443.1| 446|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform d protein.
Length = 446
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 267 RIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKYP 136
++FK+ + S + +V VKK N ++ + + D +YP
Sbjct: 319 KVFKAQYTPDSGEKRLVAVKKLNEFQKASFLAEKRIFDELNEYP 362
>AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform a protein.
Length = 744
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 267 RIFKSLFEDSSTKNNVVTVKKSNPYEADRVIELTHVLDVQKKYP 136
++FK+ + S + +V VKK N ++ + + D +YP
Sbjct: 319 KVFKAQYTPDSGEKRLVAVKKLNEFQKASFLAEKRIFDELNEYP 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,773
Number of Sequences: 27780
Number of extensions: 322905
Number of successful extensions: 853
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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