Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o21
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.77
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 3.1
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 4.1
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.5
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce... 25 7.2
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 25 9.5
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 9.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.5
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.5
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 227 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 382
P+S IPP TD ++ N LIC +Q F FD Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = -3
Query: 583 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 491
+C Y+L+ Q +G +Y G T + RR++QH+ +
Sbjct: 7 YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = -2
Query: 650 HSAKHERTHXYNHGDDSVHQQGVVRVHSAAGQWKIVHGHH 531
H E H +NH D +H+ H + + + HH
Sbjct: 534 HENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHH 573
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 287 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 177
++PY NHE++ IPL+ N +I P Q P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 287 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 171
++PY H +E L L+L EP+ F P YK
Sbjct: 760 EIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 465 ALRKHLAPCLFECCFMRLLRLLVMPV 542
+L +H PC+ + CF + LR ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323
>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 239 PLKLAL-NDDITSEPQQFSEPVYKMPIDDMMVGYN 138
P + A+ N + + PQ F EP + P D +M G N
Sbjct: 87 PFEQAIPNYNWANPPQDFEEPEWLKPFDVVMEGTN 121
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 634 KGRTXIIMATTLYTNKVWCVY-ILRQDN-GKLYTGITSNLNRRI 509
K R + A+ Y N + C Y IL QD + ++G T L R I
Sbjct: 228 KSRMQSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLI 271
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 468 LRKHLAPCLFECCFMRLLRLLVMPVY 545
LRK PC + C R+ + + P+Y
Sbjct: 179 LRKKTVPCPVQHCRKRITKKFIFPLY 204
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 279 WHVQIHVYNLFANRNLCNKSGL 344
WHV H+ F N LC K+ +
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSI 284
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.5
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = -1
Query: 363 NCVSSKPNHFCCINF 319
+C+ +P+ FCC++F
Sbjct: 168 DCIKKEPSLFCCLDF 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,997
Number of Sequences: 5004
Number of extensions: 46343
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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