Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o21
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    31   0.61 
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729...    30   1.9  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    29   3.2  
01_05_0374 - 21598480-21598487,21599547-21600672                       29   4.3  
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     27   9.9  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    27   9.9  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -2

Query: 653 RHSAKHERTHXYNHGDDSVHQQG---VVRVHSAAGQWKIVHGHHEQP*QTHK 507
           RH   H   H ++HGD   H  G     R H     W +   HH++   +H+
Sbjct: 537 RHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHE 588


>07_01_0879 -
           7290890-7291694,7291810-7291943,7292089-7292227,
           7292338-7292585
          Length = 441

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -3

Query: 589 KVWCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 491
           + +C Y+LR    +  G  Y G T N  RRI+QH+ +
Sbjct: 62  RFFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGE 98


>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
            25299876-25299927,25300530-25300673,25301002-25301258,
            25301533-25301739,25301819-25301992,25302409-25302432,
            25302610-25302677,25304607-25304665,25304802-25304877,
            25304965-25305070,25305268-25305377,25305831-25305995,
            25306571-25306656,25306893-25306957,25307280-25307330,
            25309009-25309056,25309677-25309796,25310226-25310301,
            25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 577  VYILRQDNGKLYTGITSNLNRRIKQHSNKQG 485
            +Y++ + + KLY G T +L  R+  H +K+G
Sbjct: 1110 IYVIIRRDSKLYIGQTDDLVGRLSAHRSKEG 1140


>01_05_0374 - 21598480-21598487,21599547-21600672
          Length = 377

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 415 FCSRTRSRCDTRAVNWL 465
           FC RT SR  T+ VNWL
Sbjct: 213 FCKRTFSRSSTKPVNWL 229


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 210 DIIVERQFQRDVFHLFVVAQPIVWHVQI 293
           D  V+ Q ++D++  F  + PIV HV +
Sbjct: 403 DTFVDEQLRQDIYLDFTTSDPIVLHVDV 430


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = -2

Query: 638 HERTHXYNHGDDSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQ 459
           H++   ++H     HQ  +   H    Q    H HH Q    H+  ++Q ++Q    ++Q
Sbjct: 151 HQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQ--NHHQQQYQQQQQQ---YQHQ 205

Query: 458 FTARVSQRERVRLQNRRPH 402
              +  Q+++  LQ +  H
Sbjct: 206 NLQQQYQQQQQNLQQQYQH 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,226
Number of Sequences: 37544
Number of extensions: 298784
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)