Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o19
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.081
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.14
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 1.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 1.7
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 2.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 2.3
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 3.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.0
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 4.0
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 5.3
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 5.3
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 5.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 5.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 5.3
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 7.0
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 7.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 24 7.0
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 24 9.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 9.3
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 24 9.3
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.081
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = -3
Query: 326 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 147
NL N ++ S+K + +I D PK +++ LN+VP + +DD +L + +
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 146 KDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 33
++ + E N+++ T ++ T D +++
Sbjct: 391 DEEVIETTS-LEEKNVDNQEFVTSISNGNQTLEDTSHS 427
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.14
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 233 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 72
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 254 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 144
+E +P++V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = -3
Query: 287 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFET 108
N + + ++ K + + +P ++ F+ID P+Q+D +NA+ F
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAP 944
Query: 107 LN 102
N
Sbjct: 945 YN 946
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -3
Query: 194 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 15
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 14 N 12
N
Sbjct: 698 N 698
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 365 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 243
K+ L +QFQ S+ NL+N Q ++ ++ +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 95 SDIIKTEQTDAPATSGDDNNNRKVVDANEDE 3
SDI +T + P G N + KV + +EDE
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDE 4405
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 179 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 78
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 113 ETLNIESDIIKTEQTDAPATSGDDNNN 33
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 4.0
Identities = 31/109 (28%), Positives = 41/109 (37%)
Frame = +1
Query: 4 SSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEK 183
SSSF+STT SS + S S S S SS S + + KS
Sbjct: 352 SSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSS 411
Query: 184 LSSSVHSSGTLFRRNVTFLGSFSSGIKSALILLELSDIMVVACKFNKLI 330
SS + F N T S SS S+ L LS ++ + L+
Sbjct: 412 SKSSSAPVSSAFYHNST--SSRSSSHSSSHSLSSLSSKPILTASSSSLL 458
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 4.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 133 IKSSFCSGVVNGKSIEK 183
++SSFCSG+ N + +EK
Sbjct: 97 LQSSFCSGIENLQHVEK 113
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 109 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFL 240
V++G MA+ + ++ V S S+H S +L RNV +L
Sbjct: 36 VTQGNMAYAQKNYEEAVDKYGQALMQSESIHGSESLENRNVLWL 79
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 161 TTPEQKDDFMNAIKPFETLNIESDIIKTEQ-TDAPATSGDDNNNRKVVDAN 12
T+P ++ + ++ PFETL ++S + Q +DAP+ + + NNR V N
Sbjct: 55 TSPRKRSVNLKSL-PFETLTLDSAPLGPLQFSDAPSMAPE--NNRLEVGLN 102
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 100 IFKV--SKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFL 240
IF+V S + ++ +F +G G+S + +VH + +FRR + +
Sbjct: 88 IFRVNGSSKRIQILQKAFSTGPDYGRSFDWEGYTVHDAANVFRRFINLM 136
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 5.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 248 NDPKNVTLRLNSVPEECTDDDN 183
NDP + L + ++PEE +++N
Sbjct: 237 NDPTSTALEVRNIPEEHFNEEN 258
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 5.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 152 EQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANE 9
E D F N+I + + N ++ TD P+ + DD + KVV+ +
Sbjct: 336 ESADSFNNSIDSYISPN------QSPNTDVPSLNRDDTTDPKVVNTGD 377
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -3
Query: 254 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTE 75
+E+D T ++S + D+N + + P+ +DFM+ +PF L+ + + E
Sbjct: 466 NEDDLNQFTSNISSSSKP-RKDNNKTANSSKPIPDS-EDFMDITRPFNILSPSKEALSEE 523
Query: 74 Q 72
Q
Sbjct: 524 Q 524
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.2 bits (50), Expect = 7.0
Identities = 21/102 (20%), Positives = 41/102 (40%)
Frame = -3
Query: 338 QSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLT 159
Q+ NL ++ S S + +L+P+E P+ L VPEE + D P+
Sbjct: 72 QTYENLESISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVP 131
Query: 158 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 33
+ +P N + +++T + + D +N+
Sbjct: 132 EEPLPGEPPLPNEPVPETNCHKESPLSDETVSETSKNDTSNS 173
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.2 bits (50), Expect = 7.0
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 374 IKMKINLCNIQFQSLINLLNLQATTIMSLNS----NKIKADLIPDENDPKNVTLRLNSVP 207
+K+ L QFQ N L +TIMS NS N ++ D D D N L N+V
Sbjct: 1297 LKLSSELTPQQFQLYENFDRLSLSTIMSNNSFTSLNGLRTD-SADSTDALNSNLN-NTVE 1354
Query: 206 EE 201
E
Sbjct: 1355 NE 1356
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 91 SDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLS 189
S S +S + + +K + SGVV + +EK S
Sbjct: 228 SKSFVSISSPVQSTVKPTKASGVVKSEKVEKRS 260
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.2 bits (50), Expect = 7.0
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = -3
Query: 290 LNSNKIKADL-IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPF 114
++S+ + L I ++DPK+ + EC + D + + P + + +
Sbjct: 1 MSSSSVSNTLSIETKSDPKDPAFVASQESTECNEHDTTQLSGSSSEPLENNSSLTRSTDD 60
Query: 113 ETLNIESDIIKTEQ-----TDAPATSGDDNNN 33
++ I S ++ + +D T ++NNN
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNN 92
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 23.8 bits (49), Expect = 9.3
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 308 ATTIMSLNS--NKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDF 135
AT I + S NKI + + +++ KNV P+E + N L + E++ D
Sbjct: 61 ATPISVIKSVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPN----LEVQQTEKEKDV 116
Query: 134 MNAIKPFETLNIESDIIK 81
+A E++N S K
Sbjct: 117 DSASAENESINSSSSSSK 134
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = -3
Query: 185 NFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDAN 12
N S++ + E+K F+N++ ++ +E +I + + + T+ + N+K+ + N
Sbjct: 986 NISLNNYVKDDEKKQKFLNSVIIKASVILEKEISEKQDEASQTTNVAELVNQKISEMN 1043
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 358 ICAIYNFSL*LIY*IYKRPP*CRLILIKLKP 266
I +++N ++ +Y Y P CR + K +P
Sbjct: 411 ISSVFNLAIIALYIAYSGPLMCRFVYNKFQP 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,541
Number of Sequences: 5004
Number of extensions: 29011
Number of successful extensions: 126
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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