Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o19
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 34 0.043
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 31 0.41
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 30 0.71
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 0.94
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 29 1.6
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 28 2.9
03_05_0920 - 28812796-28813325,28814019-28816377 27 3.8
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 27 5.0
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 27 5.0
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 27 6.6
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 27 6.6
01_06_0355 + 28657833-28660665,28660762-28661126 27 6.6
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 26 8.7
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 26 8.7
05_03_0484 + 14599786-14602197 26 8.7
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 26 8.7
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 33.9 bits (74), Expect = 0.043
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = -3
Query: 221 LNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDD 42
++ + +E DDD+ +++ TPE + + ++ L +E DI++++ D P GD
Sbjct: 289 MDDIDDEYDDDDDDDLNMRDATPEPDELDQDIVE--SDLELEGDIVESDHQDPPQKMGDP 346
Query: 41 NNNRKVVDANED 6
+ + V + N D
Sbjct: 347 SID--VTEENRD 356
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3
Query: 233 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPAT 54
+TL S+P+ D+ + D P+ +PE+ + ++ P T+ I+ I ++ T+A
Sbjct: 565 ITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSSYTP--TIPIKESSIVSQNTNAENV 622
Query: 53 SGD 45
SGD
Sbjct: 623 SGD 625
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 29.9 bits (64), Expect = 0.71
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 230 TLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ--TDAPA 57
TLR + ++C D L P+ + M+ I+ + +E KT ++
Sbjct: 354 TLRAQKIVKKCPSCPTDICDF-LENPQINREMMDLIESLQRKAVEEGDTKTSSDVSNGAE 412
Query: 56 TSGDDNNNRKVVDANED 6
+SGDD NN + +D
Sbjct: 413 SSGDDGNNEALEKGEDD 429
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 29.5 bits (63), Expect = 0.94
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 155 PEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKV-VDANED 6
PE+K DF+ A + ++ +I + E ++ G+D +KV +D ED
Sbjct: 1331 PEEKVDFIGASESLDSSSIADHELPDESSEKEVNMGEDEGKKKVELDDWED 1381
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 28.7 bits (61), Expect = 1.6
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Frame = -3
Query: 353 CNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSI 174
C+++F + +LQ +T++++ S+ + +D +P+E + + + D +
Sbjct: 223 CSVEFSCFLG--HLQCSTLVTVTSSSL-SDGMPEE-----CFFSVPELQDSVDGDAGVGV 274
Query: 173 DLPLTTPEQKDDFMNAIKPFETLN-IESDIIKTEQTDAPATSGDDNNNRKVVDANEDE 3
D+ +T E A+ F ++ +E D + D A +GDD+ N +EDE
Sbjct: 275 DIRITIDE-------AVPLFSCVDGMEDDDDEDCDDDVDANNGDDDENDGDTSDDEDE 325
>04_04_0827 -
28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 236 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDII 84
+VT +L S E C+ D + P+ ++KDD P + +IE D++
Sbjct: 566 SVTTKLLSY-ETCSVSDGINPASPINENKKKDDLSYGHVPMHSQSIEHDVV 615
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 257 PDENDPKNVTLRLNSV--PEECTDDDNFSIDLPLTTPE 150
PD NV L+ V P + DD++ IDL +T P+
Sbjct: 876 PDMGHAVNVLSTLSDVWKPSDPDSDDSYGIDLDMTLPQ 913
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Frame = -3
Query: 206 EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ------TDAPATSGD 45
++ +DN D P E +DD N+ PF L+ + E+ D P+ G
Sbjct: 301 DDSNAEDNPLYDYPAELSEDEDDDSNSENPFSDLDGSDPEYEKEEDKEPTMEDLPSNLGQ 360
Query: 44 DNNNRKVVDAN 12
+ + VDA+
Sbjct: 361 PSTSASSVDAS 371
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 167 PLTTPEQKDDFMNAIKPFETLNIESDI---IKTEQTDAPATSG 48
P T E K D +P +T N +S +KT +APATSG
Sbjct: 215 PKTNDEPKIDTSLGSQPLDTQNSKSSGARGLKTLSVEAPATSG 257
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +1
Query: 172 SIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILL-----ELSDIMV 303
S+ + + +HSS L + +T + S + G+K LI++ +LS+I+V
Sbjct: 815 SVYRQNEILHSSEQLLQDELTHIKSLNEGLKEKLIIMAEESTKLSEIIV 863
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 26.6 bits (56), Expect = 6.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 167 PLTTPEQKDDFMNAIKPFETLNIESDI--IKTEQTDAPATSGDDNNNRKVV 21
PLT PE + N+I+P + ES T D ATS + +KVV
Sbjct: 148 PLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVV 198
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 335 SLINLLNLQATTIMSLNSNKIKADL 261
SL + NL+ATT M+L+SN+ +L
Sbjct: 597 SLPEVENLKATTFMNLSSNRFSGNL 621
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 149 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATS 51
Q+DD N + T N++ D + T P TS
Sbjct: 194 QQDDLANLVDERNTENLQKDAMATSDFQQPCTS 226
>09_04_0199 - 15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -3
Query: 287 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDF 135
N ++I+ + D+ R+N +E T N +L LT P+ D++
Sbjct: 853 NKHRIRNSIRRDQTQKGYEAERINEQNQEMTIHSNQVHNLQLTVPDDSDEY 903
>05_03_0484 + 14599786-14602197
Length = 803
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 32 DYYYHRRLLPARRFVRF*LYPIQY 103
+Y Y ++P R FVR YP+ Y
Sbjct: 51 NYTYSFPVIPGRMFVRLHFYPVAY 74
>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 160 VNGKSIEKLSSSVHSSGTLFR----RNVTFLGSFSSGIKSALILLE-LSDIMVVACKFNK 324
+ ++++K++ ++H L N G+ + S L L+ S++ + K NK
Sbjct: 1008 ITSRTVQKMADALHEGSVLSHLSLGNNNPISGNTMLSLLSKLASLKRFSELSLTGIKLNK 1067
Query: 325 LIKD*NCIL 351
L+ D C+L
Sbjct: 1068 LMADKLCLL 1076
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,147
Number of Sequences: 37544
Number of extensions: 158468
Number of successful extensions: 495
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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