Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o19
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    31   0.21 
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   2.6  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    28   2.6  
Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    27   3.4  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   3.4  
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   4.5  
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh...    27   4.5  
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    27   4.5  
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   6.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   6.0  
AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = -3

Query: 326 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 147
           ++L++++ T++S     +KA+    EN+   + +    + EE   + +    +  +   +
Sbjct: 558 SILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTR 614

Query: 146 KDDFMNAIKPFETLNIESDIIKTEQT--DAPATSG 48
           ++ F N I PF+++N  S I++ E T  + P T+G
Sbjct: 615 RNSFKNEIPPFQSMN--SRIVQLEVTGDEIPKTAG 647


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 272 KADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIE 96
           + +L  D ND +  T   NSV E   DD++ S +  L+ P ++ +      P  +L  I 
Sbjct: 54  QCNLRDDPNDDQPTTSS-NSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAIS 106

Query: 95  SDIIKTEQTDAPATSGDDNN 36
           S  +K E TD+   S   N+
Sbjct: 107 SSTVKNEPTDSWTPSALSND 126


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 284 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 120
           + K K D   DE  P+N    + +   E  +DDN S D      E+++ F+  +K
Sbjct: 312 AGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 257 PDENDPKNVTLRLNSVPEECTDDD 186
           PD N   N  +RL  VP  C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172


>Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical
           protein C43D7.5 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -3

Query: 236 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 57
           NV  ++++  + C + + +S      T ++KD+F N     +T+N   +    E+ D   
Sbjct: 7   NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61

Query: 56  TSGDDN-NNRKVVDA 15
              +DN NNR+  ++
Sbjct: 62  YRRNDNCNNREATNS 76


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 242  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 96
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1084 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1135


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 242  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 96
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 25  TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 123
           TF L +S   S +V  AS+CSVL+I + I K+S+ +
Sbjct: 2   TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 242  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 96
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133


>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
           protein F19H8.1 protein.
          Length = 1229

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 149 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 48
           + DDF+  +   ET+ +++D+ K    D PA  G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 130 FIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLG---SFS-SGIKSALILLE 285
           F+ ++F +  VNG S   +SSS  SS + F      +G   S+S SG +  L  LE
Sbjct: 706 FVLTTFKARTVNGASFPDVSSSKFSSASAFLNATNDIGIGYSYSPSGPQPGLFALE 761


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 158 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDE 3
           TPE+    M+   P +T  I   II TE  D+P+        RK  D   +E
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEE 376


>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1229

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 149 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 48
           + DDF+  +   ET+ +++D+ K    D PA  G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582


>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 149 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 48
           + DDF+  +   ET+ +++D+ K    D PA  G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 260 IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 144
           IPD++  K +T +++    +C D+ N  + +   T +QK
Sbjct: 162 IPDQSSIKEMTKQISPYYPDCIDNPNIIVFISPDTEKQK 200


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 134 MNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNR 30
           M+  + F+ LN  + ++KTE+ + P      NNN+
Sbjct: 1   MDEFELFQQLNQTAPLVKTEEPEVPDEFQQANNNQ 35


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 134 MNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNR 30
           M+  + F+ LN  + ++KTE+ + P      NNN+
Sbjct: 1   MDEFELFQQLNQTAPLVKTEEPEVPDEFQQANNNQ 35


>AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical
           protein D2063.3a protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 260 IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNA 126
           +P E   K V +   S+ +  +D  + +   P  TP+Q+ + +NA
Sbjct: 93  VPKEIQSKVVLVASRSLSQSSSDASSTTSSTPSLTPQQEKEALNA 137


>AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical
           protein D2063.3b protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 260 IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNA 126
           +P E   K V +   S+ +  +D  + +   P  TP+Q+ + +NA
Sbjct: 93  VPKEIQSKVVLVASRSLSQSSSDASSTTSSTPSLTPQQEKEALNA 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,069,952
Number of Sequences: 27780
Number of extensions: 156400
Number of successful extensions: 521
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)