Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o16
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 332 4e-92
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 169 3e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 151 1e-37
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 120 2e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 9e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 89 8e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 80 4e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 5e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.22
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 31 0.22
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.39
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.68
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.68
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.90
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 28 1.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 3.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 3.6
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 4.8
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 6.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.4
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 26 6.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 8.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 332 bits (815), Expect = 4e-92
Identities = 156/174 (89%), Positives = 163/174 (93%)
Frame = -2
Query: 731 TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL 552
TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEAL
Sbjct: 202 TTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEAL 261
Query: 551 FQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 372
FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALA
Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALA 321
Query: 371 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 210
PS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 322 PSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 169 bits (412), Expect = 3e-43
Identities = 78/174 (44%), Positives = 117/174 (67%)
Frame = -2
Query: 731 TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL 552
++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE L
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVL 266
Query: 551 FQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 372
F P +G EA+G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
Query: 371 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 210
++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 327 GKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 151 bits (366), Expect = 1e-37
Identities = 77/176 (43%), Positives = 115/176 (65%), Gaps = 12/176 (6%)
Frame = -2
Query: 728 TAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF 549
TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LF
Sbjct: 203 TADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLF 262
Query: 548 QPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-- 375
QP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 263 QPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWF 322
Query: 374 ------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 237
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 323 ERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 120 bits (289), Expect = 2e-28
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 11/173 (6%)
Frame = -2
Query: 722 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 543
+R ++ + KE + V LD + A A+S + K +E PDG G ERFR E LF P
Sbjct: 249 KRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRISEILFNP 305
Query: 542 SFLGMEAN---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 390
SF + G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q
Sbjct: 306 SFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQA 365
Query: 389 EITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 237
E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 366 EVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 9e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 518 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 339
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 338 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 213
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 88.6 bits (210), Expect = 8e-19
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Frame = -2
Query: 722 EREIVRDIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------ 603
E IV +IKE +CYV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 602 GQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 423
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330
Query: 422 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 243
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 331 KFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSE 389
Query: 242 SGPSIVHRK 216
G +I+ RK
Sbjct: 390 HGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 79.8 bits (188), Expect = 4e-16
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Frame = -2
Query: 701 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 534
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 533 GME-ANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST-- 363
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 362 ------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 219
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 5e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -2
Query: 578 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 399
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 398 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 225
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 464 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 294
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 293 SLSTFQQMWISKQEYDESGPSIVHRK 216
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.22
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3
Query: 712 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 542
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -2
Query: 722 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 543
E +I + K ++ D Q+ T+ SSL SYE + + ++ P + F+P
Sbjct: 81 ELDIAKSDSYKYTFIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKP 138
Query: 542 SFLGMEANGIHETTYNSIMKCDVDIR 465
++ G G E + I + + IR
Sbjct: 139 TYRGRPVEGAPELDVSKITQFSIMIR 164
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.9 bits (64), Expect = 0.39
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
PS S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPT 1658
Score = 28.3 bits (60), Expect = 1.2
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
PS + TS +S S S P P +PS S T+ +SPS + S + +S
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPT 1644
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1587 PTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPT 1672
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPT 1679
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPT 1714
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPT 1721
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1703 SYSPTSPSYSPTSPSYSPTSPSYSPT 1728
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1710 SYSPTSPSYSPTSPSYSPTSPSYSPT 1735
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1717 SYSPTSPSYSPTSPSYSPTSPSYSPT 1742
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Query: 547 --NPHSWVWKPTASTKPHTTPS*SAT 476
+P S + PT+ + T+PS S T
Sbjct: 1724 SYSPTSPSYSPTSPSYSPTSPSYSPT 1749
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS- 548
P+ S+ + S + + + S P P +PS S T+ +SPS + S + +S
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Query: 547 --NPHSWVWKPTASTKPHTTPS 488
+P S + PT+ + T+PS
Sbjct: 1731 SYSPTSPSYSPTSPSYSPTSPS 1752
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 727 PPSGKSFVTSRRSCA--TSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSET 578
PP S VTS S +SLS+S A+ S SLTN + S+PS T
Sbjct: 492 PPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTT 543
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.68
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = -3
Query: 703 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWK 524
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 523 PTASTKPHTTPS*SATWTS 467
T S+ ++ S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.90
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -3
Query: 727 PPSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPS-ETKDSVAQR-L 554
PP+G S T STSS PP + S ++ P + +S S T S+
Sbjct: 346 PPTGNS-TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGN 404
Query: 553 SSNPHSWVWKPTASTKPHTT 494
S+ P + PT+S+ P TT
Sbjct: 405 STTPVTPTVPPTSSSTPLTT 424
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -3
Query: 727 PPSGKSFVTSRRSCA-TSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLS 551
PP+G S + TS S++S PP ++ S + P+ +S + + S
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351
Query: 550 SNPHSWVWKPTASTKPHTTPS*SAT 476
+ P + PT+++ T P ++T
Sbjct: 352 TTPVTPTVPPTSTSSTSTPPPPAST 376
Score = 25.4 bits (53), Expect = 8.4
Identities = 43/175 (24%), Positives = 55/175 (31%), Gaps = 1/175 (0%)
Frame = -3
Query: 730 PPPSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPS-RSLTNFPTVRSSPSETKDSVAQRL 554
PP S S TS TS S++ PL + S + T+ PT SS T +
Sbjct: 196 PPTSTSS--TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
Query: 553 SSNPHSWVWKPTASTKPHTTPS*SATWTSXXXXXXXXXXXXXXXXTLESPTVCKRKXXXX 374
+S + + P ST T S TS T +PTV
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Query: 373 XXXXXXXXXXXXXRGSTPYGSVDRSSPPSLPSNRCGSRNRSTTSLVPPLYTGSAS 209
S+P S S S G+ T VPP T S S
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTS 368
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 691 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPT-A 515
S ++ TS R PP + + SL N P RSS E D V + P + K + A
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQTPSTKASVA 99
Query: 514 STKP 503
+ KP
Sbjct: 100 NVKP 103
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 676 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWV 530
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 317 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 216
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 652 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPHTTPS 488
PP+ +PS SL P S + + S R ++ S + KP+ P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 3.6
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -2
Query: 671 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEANGIHET 504
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 503 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 324
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 323 S 321
S
Sbjct: 225 S 225
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 652 PPLHPAA-PSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPH 500
PP HPA+ SR + ++ TV+SSPS T ++L + P + T S+ P+
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT---TYRQLPNEPQNSAAYTTYSSFPN 122
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 730 PPPSGKSFVTSRRSCATSLSTSSR--RWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQR 557
P S S V+S A S S+ R PPL P P S + + ++ S++ + A
Sbjct: 150 PSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASASA 209
Query: 556 LSSN 545
LSS+
Sbjct: 210 LSSD 213
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.8
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = -3
Query: 730 PPPSGKSFVTSRRSCATSLSTSSRRWPPLHPA-AP---SRSLTNFPTVRSSPSETKDSVA 563
PP G + +TSR S SS+ L P +P SR ++ P++ SS D
Sbjct: 234 PPAHGSTSMTSRSKLDDSTDNSSKPRTSLQPGESPMKSSRDISRKPSMASSVLSPSDYFP 293
Query: 562 Q--RLSSNPHSWVWKPTASTKPHT 497
Q R S P + + +P ++ P T
Sbjct: 294 QHRRFQSAP-APIPRPVSTLIPLT 316
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDS 569
P FVT +S + S ++W P + + + T+ PT+R P K +
Sbjct: 53 PGNSYFVTRNKSSIIAFSIG-KKWKPGNGFSIIATHTDSPTLRLKPKSQKSA 103
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 392 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 282
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.4
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = -3
Query: 724 PSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRS-LTNFPTVRSSPSETKDSVAQRLSS 548
P+ S +SR + SLS ++ P+H APS S + FP +++ + K S S
Sbjct: 109 PNLVSRSSSRLGDSPSLSPVAQVANPIHHTAPSPSDVRAFPIHKNASTGVKRSFFSSSMS 168
Query: 547 N----PHSWVWKPTASTKPHTTPS 488
N P S P + H PS
Sbjct: 169 NGAMSPPSHSPSPFLQSSQHIPPS 192
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 730 PPPSGKSFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFP 605
PP + TSR + A+SLS++S H + S +T P
Sbjct: 486 PPAENEKPHTSRTNTASSLSSTSEDQVSTHGSISSAKVTAIP 527
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.4
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 712 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRS-SPSETKDSVAQRLSSNPHS 536
S V+S S TSLSTS + PA S V S + S T S SS S
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSS---S 935
Query: 535 WVWKPTASTKPHTTPS*SATWTS 467
+ A++ T+ S +++W+S
Sbjct: 936 AITSSVAASVTPTSSSSASSWSS 958
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 579 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 704
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 435 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 256
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 255 GV 250
V
Sbjct: 534 AV 535
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 643 HPAAPSRSLTNFPTVRSSPSETKDSV 566
HPA+ SLTN ++ + P+ D +
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMI 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,692
Number of Sequences: 5004
Number of extensions: 66082
Number of successful extensions: 320
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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