Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o09
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061393-1|AAL28941.1|  221|Drosophila melanogaster LD31474p pro...   273   1e-73
AE014298-2305|AAN09378.1|  221|Drosophila melanogaster CG9172-PB...   273   1e-73
AE014298-2304|AAF48552.1|  221|Drosophila melanogaster CG9172-PA...   273   1e-73
BT022267-1|AAY54683.1|  213|Drosophila melanogaster IP08160p pro...   264   1e-70
AE014297-4390|AAF56901.1|  212|Drosophila melanogaster CG2014-PA...   264   1e-70
AE014298-914|AAF46176.1|  438|Drosophila melanogaster CG14443-PA...    29   6.2  
AE014296-1408|AAF50458.1|   97|Drosophila melanogaster CG13673-P...    29   6.2  
AE014296-602|AAF47740.1| 2272|Drosophila melanogaster CG14967-PA...    29   6.2  
EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki pro...    29   8.1  
AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA...    29   8.1  
AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-P...    29   8.1  

>AY061393-1|AAL28941.1|  221|Drosophila melanogaster LD31474p
           protein.
          Length = 221

 Score =  273 bits (670), Expect = 1e-73
 Identities = 126/158 (79%), Positives = 139/158 (87%), Gaps = 1/158 (0%)
 Frame = -3

Query: 513 KRPYSPF-QDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDR 337
           K+ YSPF    S++AE ++ARLDDLLNWGRKGS+WP+TFGLACCAVEMMHIAAPRYDMDR
Sbjct: 54  KKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDR 113

Query: 336 YGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXX 157
           YGVVFRASPRQ+DV+IVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN          
Sbjct: 114 YGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYS 173

Query: 156 XXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 43
              GCDRI+PVDIYVPGCPPTAEAL+YGVLQLQKK+KR
Sbjct: 174 VVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKR 211


>AE014298-2305|AAN09378.1|  221|Drosophila melanogaster CG9172-PB,
           isoform B protein.
          Length = 221

 Score =  273 bits (670), Expect = 1e-73
 Identities = 126/158 (79%), Positives = 139/158 (87%), Gaps = 1/158 (0%)
 Frame = -3

Query: 513 KRPYSPF-QDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDR 337
           K+ YSPF    S++AE ++ARLDDLLNWGRKGS+WP+TFGLACCAVEMMHIAAPRYDMDR
Sbjct: 54  KKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDR 113

Query: 336 YGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXX 157
           YGVVFRASPRQ+DV+IVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN          
Sbjct: 114 YGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYS 173

Query: 156 XXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 43
              GCDRI+PVDIYVPGCPPTAEAL+YGVLQLQKK+KR
Sbjct: 174 VVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKR 211


>AE014298-2304|AAF48552.1|  221|Drosophila melanogaster CG9172-PA,
           isoform A protein.
          Length = 221

 Score =  273 bits (670), Expect = 1e-73
 Identities = 126/158 (79%), Positives = 139/158 (87%), Gaps = 1/158 (0%)
 Frame = -3

Query: 513 KRPYSPF-QDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDR 337
           K+ YSPF    S++AE ++ARLDDLLNWGRKGS+WP+TFGLACCAVEMMHIAAPRYDMDR
Sbjct: 54  KKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDR 113

Query: 336 YGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXX 157
           YGVVFRASPRQ+DV+IVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN          
Sbjct: 114 YGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYS 173

Query: 156 XXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 43
              GCDRI+PVDIYVPGCPPTAEAL+YGVLQLQKK+KR
Sbjct: 174 VVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKR 211


>BT022267-1|AAY54683.1|  213|Drosophila melanogaster IP08160p
           protein.
          Length = 213

 Score =  264 bits (646), Expect = 1e-70
 Identities = 124/162 (76%), Positives = 134/162 (82%), Gaps = 1/162 (0%)
 Frame = -3

Query: 525 NPTEKRPYSPF-QDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRY 349
           NP  K  YS F ++     E   ARLDDLLNWGRKGSLWP+TFGLACCAVEMMHIAAPRY
Sbjct: 43  NPP-KWGYSAFGRNQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRY 101

Query: 348 DMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXX 169
           DMDRYGVVFRASPRQ+DV+IVAGTLTNKMAPA RK+YDQMP+PRWVISMGSCAN      
Sbjct: 102 DMDRYGVVFRASPRQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYH 161

Query: 168 XXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 43
                  GCDRIVPVDIYVPGCPPTAEAL+YG+LQLQKK+KR
Sbjct: 162 YSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKVKR 203


>AE014297-4390|AAF56901.1|  212|Drosophila melanogaster CG2014-PA
           protein.
          Length = 212

 Score =  264 bits (646), Expect = 1e-70
 Identities = 124/162 (76%), Positives = 134/162 (82%), Gaps = 1/162 (0%)
 Frame = -3

Query: 525 NPTEKRPYSPF-QDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRY 349
           NP  K  YS F ++     E   ARLDDLLNWGRKGSLWP+TFGLACCAVEMMHIAAPRY
Sbjct: 42  NPP-KWGYSAFGRNQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRY 100

Query: 348 DMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXX 169
           DMDRYGVVFRASPRQ+DV+IVAGTLTNKMAPA RK+YDQMP+PRWVISMGSCAN      
Sbjct: 101 DMDRYGVVFRASPRQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYH 160

Query: 168 XXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 43
                  GCDRIVPVDIYVPGCPPTAEAL+YG+LQLQKK+KR
Sbjct: 161 YSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKVKR 202


>AE014298-914|AAF46176.1|  438|Drosophila melanogaster CG14443-PA
           protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 609 PNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNM 475
           P  VLSF + G    ++ Q+ D     P P + + +S  ++  N+
Sbjct: 28  PEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNI 72


>AE014296-1408|AAF50458.1|   97|Drosophila melanogaster CG13673-PA
           protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 351 SEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPYY 482
           +E QQ+A+S +R  L Q +    + +S +S S  + PQ S  +Y
Sbjct: 26  NEQQQHAASEERPLLSQSAATSSDSTSRSSSSSNISPQLSYGWY 69


>AE014296-602|AAF47740.1| 2272|Drosophila melanogaster CG14967-PA
            protein.
          Length = 2272

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 639  QAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQ-DASNMAEMA 463
            +A+K+     PN+ +   K+   T  +S   +  LP  NP      +P Q  A+ M +  
Sbjct: 1513 EAVKSYRKEGPNSAVLKHKRSDSTITLSSTNNEVLPISNPNASMKKAPAQIHATAMLQQL 1572

Query: 462  VARLDDLLN 436
            +A  D   N
Sbjct: 1573 IAEADHKFN 1581


>EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki protein.
          Length = 2381

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 300  QTDGEMLGILRHIGPYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLP 476
            Q D + + + +   PYH E   ++SS      D  +   G  S P SIS  V   PS P
Sbjct: 2315 QCDPQQMMLPQRYNPYHMEHDAWSSS-----CDMANDFAGYASVPQSISGSVSSPPSAP 2368


>AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA
           protein.
          Length = 3111

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 555 QIRDTHL----PAPNPTEKRPYSPFQDA-SNMAEMAVARLDDLLNWGRKGSLWPMTFG 397
           Q+RD HL    P  +    + Y   +D  S+   +AVA +  L NWGR+GS+ P   G
Sbjct: 388 QLRDKHLYNIAPLRHKQGLQLYYDEEDTHSDEERLAVATVFGL-NWGRRGSVGPAAAG 444


>AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-PA
            protein.
          Length = 2355

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 300  QTDGEMLGILRHIGPYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLP 476
            Q D + + + +   PYH E   ++SS      D  +   G  S P SIS  V   PS P
Sbjct: 2289 QCDPQQMMLPQRYNPYHMEHDAWSSS-----CDMANDFAGYASVPQSISGSVSSPPSAP 2342


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,448,458
Number of Sequences: 53049
Number of extensions: 706914
Number of successful extensions: 1781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)