Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13o08
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05) 33 0.36
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 33 0.36
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19) 32 0.62
SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39) 31 0.82
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 31 1.1
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07) 29 3.3
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59) 29 3.3
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_52182| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=1.9) 29 4.4
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 28 7.7
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 34.3 bits (75), Expect = 0.12
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 242 GIQSENMRKLRSKAGDKATSNAKENALNAAHGAKALSEALLFEITLATVDQVVVGSDATK 301
Query: 424 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDN 248
+ +Y ++ N A +++ T ++ F++ KG T + E
Sbjct: 302 LSYGIKNLELEYESLRDDNFARSAAAAYQNGTTFFYEQVNLHKTFVISKG-TDSIINESV 360
Query: 247 GMLRFEVDSMIVCLIDPNTGPLSERE 170
+ R + +++ ++P T + E
Sbjct: 361 NLPRRSMSGLLLLFVEPYTAGARDSE 386
>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
Length = 340
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +2
Query: 251 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 430
++ S+ R +FE NK+ ++ K C G+I G + +VV G+ NA+
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261
Query: 431 FVGALFDYVVY 463
V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K ++ +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 833 GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSDATK 892
Query: 424 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVE 254
+ +Y ++ N A +++ T ++ F++ KG VE
Sbjct: 893 LSYGIKNLELEYESLRDDNLALSAAAAYQNGATFFYEKVNLHKTFVISKGTDSIINVE 950
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 32.7 bits (71), Expect = 0.36
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSDATK 516
Query: 424 TNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGITPTKTVED 251
+ +Y + + S+ GT F + K+ I I + E
Sbjct: 517 LSYGIKNLELEYESLKDDNLARSAAAAYQNGTTFFYEQVNLHKTFVISIINIVDSIINES 576
Query: 250 NGMLRFEVDSMIVCLIDPNT--GPLSEREV-RELRKSNCTLVYTKNEAAQQVLLENNF 86
+ R + +++ ++P T G SE+ V +++ T+ N+ Q L +F
Sbjct: 577 VNLPRRSMSGLLLLFVEPYTAGGRDSEKFVYPDIKSVRVTIDGMPNKVFSQGLRPTDF 634
>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
Length = 1562
Score = 31.9 bits (69), Expect = 0.62
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + +NA+ L AHG LS+ + E + D V GS+
Sbjct: 792 GIQSENMRKLRSKAGDKATSNAKEIALNAAHGARALSEALLFEITFATVDQVVVGSDATK 851
Query: 424 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDN 248
+ +Y ++ N A +++ T ++ F++ K +T +K E
Sbjct: 852 LSYGIKNLELEYESLRDDNLARSAAAAYQNGTTFFYEQVNLYKTFVISK-VTDSKIKESV 910
Query: 247 GMLRFEVDSMIVCLIDP 197
+ R + +++ + P
Sbjct: 911 NLPRRSMSGLLLLFVAP 927
>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
Length = 566
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -3
Query: 153 NPTALWCTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 4
N T + T+K L+K +T LL LTK P+S K ++ T+K ++ TKK+
Sbjct: 26 NSTLVHHTKKPLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 78
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = -3
Query: 132 TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 4
T+K + L+K +T LL LTK P+S K ++ T+K ++ TKK+
Sbjct: 384 TKKLQSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKL 429
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -3
Query: 132 TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 4
T+K L+K +T LL LTK P+S K ++ T+K ++ TKK+
Sbjct: 412 TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 457
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 31.1 bits (67), Expect = 1.1
Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 4/177 (2%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + +NA+ L HG LS+ + E + D V G++
Sbjct: 125 GIQSENMRKLRSKAGDKATSNAKENALSATHGARALSEALLFEITFASADQVVVGTDATK 184
Query: 424 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDN 248
+ +Y ++ N A +++ T ++ F++ KG T + E
Sbjct: 185 LSYGIKNLELEYESLRDDNLARSAAAAYHNGTTFFYEQVHLHKTFVISKG-TDSIINESV 243
Query: 247 GMLRFEVDSMIVCLIDPNTGPLSERE---VRELRKSNCTLVYTKNEAAQQVLLENNF 86
+ R + +++ ++P T + E +++ T+ T N+ Q L +F
Sbjct: 244 NLPRRSMSGLLLLFVEPYTAGTRDSEKFVYPDIKSVRVTIDGTPNKVFSQGLRPTDF 300
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -2
Query: 508 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGT 329
+ +L + +I K L+++ I K+ N GT+ + T DYG S N N R T
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERST 1432
Query: 328 ANFDIKE 308
++E
Sbjct: 1433 KRAALEE 1439
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Frame = -2
Query: 547 NNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDY-GVKSPN 371
+NA+ L AHG LS+ + E L+ D V GS+ +Y ++ N
Sbjct: 14 SNAKENALNAAHGAKALSEALLFEITLATVDQVVVGSDATKLFYGIKNLELEYESLRDDN 73
Query: 370 AASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDNGMLRFEVDSMIVCLIDPNT 191
A +S+ T ++ F++ KG T + E + R + +++ ++P T
Sbjct: 74 LARSSAAAYQNGTTFFYEQVNLHKTFVISKG-TDSIINESVNLPRRSMSGLLLLFVEPYT 132
>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
Length = 729
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 144 QLDL-RNSRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLI- 317
QL L +NSR S P+L ++ ++ T + + + ++ PL T++ D+ L
Sbjct: 551 QLPLPKNSRGEVSGREPLLKVLRRALLKFTELQTLLIQIEAVIDSRPLTTVSDDVRDLSP 610
Query: 318 ---SKFAVPRVMVTLLDV 362
+ A+ R VTL DV
Sbjct: 611 ITPAHLAIRRAFVTLPDV 628
>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
Length = 246
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + NA+ L AHG LS+ + E L+ D+V GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSDATK 184
Query: 424 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 278
S + + +Y ++ N A +++ T + F++ KG
Sbjct: 185 L-SYGVKNLEEYESLRDDNLARSAAAAYQNGTTFFYKQVNLPKTFVISKG 233
>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -2
Query: 646 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 479
+L L L E P+L ++ +SD+ + ++L N R R+ GD Q+ +A
Sbjct: 77 SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136
Query: 478 EKPLSIDDIVKEGSNKV 428
E ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149
>SB_52182| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=1.9)
Length = 149
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 283 KGITPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSERE 170
+G+TPT+ ED + R + S++ + P T PLSE+E
Sbjct: 32 EGVTPTELSEDLSLSREDALSILQVVRKPQT-PLSEKE 68
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Frame = -2
Query: 604 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 425
G SE++ +K + +NA+ L HG LS+ + E + D V G++
Sbjct: 1307 GIQSENMRKLRSKAGDKATSNAKENALSATHGARALSEALLFEITFASADQVVVGTDATK 1366
Query: 424 TNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF-DIKEFKSMFIVFKGITPTKTVEDN 248
+ +Y + + S+ V GT F + F++ KG T E
Sbjct: 1367 LSYGIKNLELEYESLRDDNLARSAAVAYHNGTTFFYEQVNLHKTFVISKG-TDIIINESV 1425
Query: 247 GMLRFEVDSMIVCLIDPNTGPLSERE 170
+ R + +++ ++P T + E
Sbjct: 1426 NLPRRSMSGLLLLFVEPYTAGTRDSE 1451
>SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = -2
Query: 547 NNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNA 368
+NA+ L AHG LS+ + E + D V GS+ + +Y +
Sbjct: 14 SNAKENALNAAHGARALSEALLFEITYATVDQVVVGSDATKLSYGIKNLELEYESLRDDN 73
Query: 367 ASTSSNVTMTRGTANFDIK-EFKSMFIVFKGITPTKTVEDNGMLRFEVDSMIVCLIDPNT 191
+ S+ GT F ++ F++ KG T + E + R + +++ ++P T
Sbjct: 74 LARSAAAAYQNGTTFFYVQVNLHKTFVISKG-TDSIINESVNLPRRSMSGLLLLFMEPYT 132
Query: 190 GPLSERE 170
+ E
Sbjct: 133 AGARDSE 139
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = -2
Query: 547 NNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDY-GVKSPN 371
+NA+ L AHG LSQ + E L+ D V GS+ + +Y ++ N
Sbjct: 14 SNAKENALNAAHGAKALSQALLFEITLATVDQVVVGSDATKLSYGIKNLELEYKSLRDHN 73
Query: 370 AASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDNGMLRFEVDSMIVCLIDPNT 191
A +++ T ++ F++ KG T + + + + + +++ ++P T
Sbjct: 74 LARSAAAAYQNGTTFFYEQVNLHKTFVISKG-TDSIINKSVNLPQRSMSGLLLLFVEPYT 132
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,748,477
Number of Sequences: 59808
Number of extensions: 534497
Number of successful extensions: 1611
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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