Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o07
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    33   0.044
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    31   0.23 
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    29   0.95 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.7  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 25/86 (29%), Positives = 42/86 (48%)
 Frame = -3

Query: 495 QLLSYYIIYC*FKMKND*FFLCDIT*FGLRLLCN*PHFSLVPEAKAELKIVQNFILKEVF 316
           QLL YY IY  FK+  D   L +     ++ + +  HF L+ +    L+I  N+  +E F
Sbjct: 550 QLLEYYDIYLKFKLLADWRLLTNPV-LQIQEISDYCHFKLLKKVNRNLQIKTNYPTQE-F 607

Query: 315 NVLSILNLSFVGIENFHFFLHSGSEF 238
           ++L    +  + I    +FLH  S +
Sbjct: 608 HLLR-PTIKILQISKHEYFLHFSSSY 632


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 387 HFSLVPEAKAELKIVQNFILKEVFNVLSILNLSFVGIENFHFFLHSGSEFDIIM-*CIFD 211
           + SL P+ +A L       L+E+    ++L + F+G   FH  L + +  +I++  C  +
Sbjct: 101 YVSLSPQVRANLAAYYGLSLQEI---QAVLEMVFIGKLGFHAILDTNASREIVLQQCAQE 157

Query: 210 FCTHY 196
           FC  +
Sbjct: 158 FCNSW 162


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 104 QLLGSAHQFNKSQMSALHNQLQNHMILHLIA 196
           QL G AH+FN+   + L N ++ H  L  +A
Sbjct: 90  QLCGDAHKFNEDAKTDLRNSIKQHQQLKELA 120


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 93  NNNVNY*VPHTNLTSHKCQHYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 248
           NN+ NY V       H+C+ ++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 505 FDISITFILYNLLLIQNEK*LV-FFM*HHIVW 413
           F  S +FILYNLL+  +      FF  H +VW
Sbjct: 849 FRFSFSFILYNLLISTSTVFFAGFFRRHLMVW 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,046
Number of Sequences: 5004
Number of extensions: 57545
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)