Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13o06
         (786 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   455   e-128
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   455   e-128
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   455   e-128
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   455   e-128
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   455   e-128

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  455 bits (1122), Expect = e-128
 Identities = 208/252 (82%), Positives = 227/252 (90%)
 Frame = -2

Query: 785 DFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 606
           DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V 
Sbjct: 160 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 219

Query: 605 SVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVAR 426
           +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVAR
Sbjct: 220 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 279

Query: 425 AGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNN 246
           AGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNN
Sbjct: 280 AGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 339

Query: 245 DFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 66
           DFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AF
Sbjct: 340 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 399

Query: 65  MGTLKKDRIREE 30
           MG LKKDR++EE
Sbjct: 400 MGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  455 bits (1122), Expect = e-128
 Identities = 208/252 (82%), Positives = 227/252 (90%)
 Frame = -2

Query: 785 DFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 606
           DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V 
Sbjct: 149 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 208

Query: 605 SVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVAR 426
           +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVAR
Sbjct: 209 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 268

Query: 425 AGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNN 246
           AGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNN
Sbjct: 269 AGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 328

Query: 245 DFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 66
           DFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AF
Sbjct: 329 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 388

Query: 65  MGTLKKDRIREE 30
           MG LKKDR++EE
Sbjct: 389 MGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  455 bits (1122), Expect = e-128
 Identities = 208/252 (82%), Positives = 227/252 (90%)
 Frame = -2

Query: 785 DFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 606
           DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V 
Sbjct: 136 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 195

Query: 605 SVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVAR 426
           +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVAR
Sbjct: 196 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 255

Query: 425 AGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNN 246
           AGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNN
Sbjct: 256 AGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 315

Query: 245 DFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 66
           DFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AF
Sbjct: 316 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 375

Query: 65  MGTLKKDRIREE 30
           MG LKKDR++EE
Sbjct: 376 MGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  455 bits (1122), Expect = e-128
 Identities = 208/252 (82%), Positives = 227/252 (90%)
 Frame = -2

Query: 785 DFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 606
           DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V 
Sbjct: 136 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 195

Query: 605 SVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVAR 426
           +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVAR
Sbjct: 196 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 255

Query: 425 AGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNN 246
           AGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNN
Sbjct: 256 AGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 315

Query: 245 DFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 66
           DFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AF
Sbjct: 316 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 375

Query: 65  MGTLKKDRIREE 30
           MG LKKDR++EE
Sbjct: 376 MGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  455 bits (1122), Expect = e-128
 Identities = 208/252 (82%), Positives = 227/252 (90%)
 Frame = -2

Query: 785 DFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 606
           DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V 
Sbjct: 149 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 208

Query: 605 SVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVAR 426
           +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVAR
Sbjct: 209 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 268

Query: 425 AGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNN 246
           AGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNN
Sbjct: 269 AGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 328

Query: 245 DFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAF 66
           DFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AF
Sbjct: 329 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 388

Query: 65  MGTLKKDRIREE 30
           MG LKKDR++EE
Sbjct: 389 MGPLKKDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,792,143
Number of Sequences: 53049
Number of extensions: 831485
Number of successful extensions: 2321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2321
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)