Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n18
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...   179   5e-46
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    28   1.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.5  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   9.5  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score =  179 bits (435), Expect = 5e-46
 Identities = 73/157 (46%), Positives = 113/157 (71%)
 Frame = -3

Query: 562 PKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKI 383
           P  CSG++L R   ++NL++G +F+G+V++P G   VSP DK   +  G +V++CSWA+I
Sbjct: 39  PNACSGKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARI 98

Query: 382 DETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFS 203
           +E PFSR+     RLLP+LVA+NP+NYG+P++L+C EALAA M+I G+ +EA+  +  F 
Sbjct: 99  EEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFK 158

Query: 202 WGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVK 92
           WGHSF E+N + LD+YA C D++ + E +  +LE ++
Sbjct: 159 WGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEME 195


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 342 LGCGDFILLNGVSSIFAHEQSMTANPNVSIMLLSLGLTH*VPTGDKTKP*NLCPSFKF 515
           LGCGD +L N + S       + A+P++      LGL   V  G+K    +  PS  F
Sbjct: 40  LGCGDGVLTNELVSQCRRVVGIDASPDMIKAARELGLNAYVIPGEKLLDASEIPSESF 97


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 226 KFYLSKFSWGHSFLELNSDALDLYAACT 143
           K  L+ F W  +F   N+ A+D YA CT
Sbjct: 486 KILLNNFDW--NFFNYNNSAIDSYAKCT 511


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = -3

Query: 448  PNDKSIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEA 269
            P D+  I+   + + +C +   +   FS+   P+     FL+A   + YG P     V  
Sbjct: 949  PLDRKRIDAISVILSECGFVLFN---FSQ---PYYYYFSFLLAEMYLRYGNPSLRYSVMF 1002

Query: 268  LAAAMFITGHKSEAKFYLSK 209
            LA+  F+T  K E    +S+
Sbjct: 1003 LASYCFVTRRKPEFLLRISQ 1022


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 24  QLSDALVVIQVGXPR*AVSSCSFFTDSKNVACASK--TLLLSVHAAYRSNASEFNSKN 191
           Q +DAL  +  G P  A + C  + D+     + K    L ++  AY  +  EF S N
Sbjct: 390 QGTDALAALGYGTPSSAATLCPLYRDTPAAIVSEKLHLRLANLRIAYCEDCREFISLN 447


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 548 RTFFWDRNDSDPTCLLKM 601
           ++FF   +DSD TCLLK+
Sbjct: 335 KSFFLIASDSDDTCLLKI 352


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 121 PLKHFYCQCTLHIDLMHQNSTLKTNDPTRT 210
           P+K  Y    + IDL H  S+LK N P+ +
Sbjct: 160 PIKVLYVFVDIKIDLQHVVSSLKHNLPSNS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,154
Number of Sequences: 5004
Number of extensions: 61690
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)