Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n18
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491...   183   2e-46
07_01_1088 + 9995442-9997736                                           30   1.9  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    29   5.7  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   7.5  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    28   7.5  

>03_02_0011 -
           4909292-4909434,4909520-4909626,4910100-4910171,
           4910713-4910803,4911136-4911272,4911377-4911417,
           4911681-4911746,4912756-4913082
          Length = 327

 Score =  183 bits (445), Expect = 2e-46
 Identities = 79/154 (51%), Positives = 111/154 (72%)
 Frame = -3

Query: 559 KKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKID 380
           K+C+GRKL R  L+K L++ + F G+VLSPVGTQCVS  D+ I++  GLAV+DCSWA++ 
Sbjct: 117 KRCTGRKLSRFGLLKELRVTNGFGGVVLSPVGTQCVSKEDRHIVQRKGLAVVDCSWARLS 176

Query: 379 ETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFSW 200
           + PF +++   PRLLP+LVAANP+NYG+P +LSCVEAL+AA+ I G +  A   L KF W
Sbjct: 177 DVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETAHLLLGKFKW 236

Query: 199 GHSFLELNSDALDLYAACTDSKSVLEAQATFLES 98
           GHSFL +N + L  Y+ C +   ++  Q ++L S
Sbjct: 237 GHSFLSVNRELLKAYSQCENGTEIINVQNSWLSS 270


>07_01_1088 + 9995442-9997736
          Length = 764

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 256 MFITG--HKSEAKFYLSKFSWGHSFLELNSDALDLYAACT 143
           +FIT   HK   + YL  F W   F+ L SDAL +YA  T
Sbjct: 29  LFITASRHKFPIRSYLRSFIW---FVYLGSDALAIYALAT 65


>06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,
            6836348-6836416,6836495-6836593,6836681-6836759,
            6837604-6837704,6838645-6838713,6839548-6839588,
            6839793-6841159,6841472-6841575,6841914-6842351,
            6843040-6843567
          Length = 1078

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +2

Query: 497  VPKFQVFYEVMP**FTARTFFWDRNDSDPTCLLKM*L*FLHHQNCLHQCRPMKI**LNHL 676
            VP   +  E +P     R      N  D    L+M L      N LH C P+ +     L
Sbjct: 871  VPNLSIVTEFLPRGSLFRLIHRPNNQLDERRRLRMALDVARGMNYLHNCSPVVV--HRDL 928

Query: 677  MSPRXLVERD-VLNAC 721
             SP  LV+++ V+  C
Sbjct: 929  KSPNLLVDKNWVVKVC 944


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 385 IDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAA 257
           +D+    R  SP     PF+ AA    Y  P Q+ C  A AAA
Sbjct: 183 LDDAAHHRKPSP-----PFVAAAAAAAYASPDQMECTSAAAAA 220


>02_05_0717 + 31190626-31191234,31191954-31192394,31192699-31192802,
            31193000-31194384,31194508-31194548,31195065-31195133,
            31195335-31195435,31195747-31195825,31195939-31196037,
            31196119-31196187,31197609-31197658,31197749-31197925,
            31198045-31198152,31198224-31198290
          Length = 1132

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +2

Query: 497  VPKFQVFYEVMP**FTARTFFWDRNDSDPTCLLKM*L*FLHHQNCLHQCRPMKI**LNHL 676
            VP   +  E +P     R      N  D    L+M L      N LH C P+ +     L
Sbjct: 905  VPNLSIVTEFLPRGSLFRLIHRPNNQLDERKRLRMALDVARGMNYLHNCTPVIV--HRDL 962

Query: 677  MSPRXLVERD-VLNAC 721
             SP  LV+++ V+  C
Sbjct: 963  KSPNLLVDKNWVVKVC 978


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,859
Number of Sequences: 37544
Number of extensions: 385961
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)