Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n18
         (798 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010036-1|AAQ22505.1|  274|Drosophila melanogaster LD46811p pro...   232   5e-61
AE014297-1987|AAF55160.1|  274|Drosophila melanogaster CG4338-PA...   232   5e-61
AE014297-3888|AAF56541.1| 1270|Drosophila melanogaster CG8968-PA...    29   9.7  

>BT010036-1|AAQ22505.1|  274|Drosophila melanogaster LD46811p
           protein.
          Length = 274

 Score =  232 bits (567), Expect = 5e-61
 Identities = 103/161 (63%), Positives = 127/161 (78%)
 Frame = -3

Query: 562 PKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKI 383
           PKKCSGRKL R  LI NL+LG +F GLVLSPVG  CVSP D+ ++ + G+AVIDCSWAK+
Sbjct: 79  PKKCSGRKLARLGLISNLRLGQKFPGLVLSPVGQLCVSPLDRDVVASSGVAVIDCSWAKL 138

Query: 382 DETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFS 203
           DETPF RM+SPHPRLLPFLVAANPINYGKP +LSCVEA+AA ++I G   EA+++L KFS
Sbjct: 139 DETPFGRMRSPHPRLLPFLVAANPINYGKPCKLSCVEAIAATLYICGFTEEARWFLGKFS 198

Query: 202 WGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVKXEQD 80
           WGH+FLELN   L+ YAAC  S  +++ Q  +LE  + E+D
Sbjct: 199 WGHAFLELNDKLLNAYAACKSSDEIVKVQNEYLEKEQQERD 239



 Score = 39.1 bits (87), Expect = 0.007
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -2

Query: 599 FSVSMWDLNHCDPKKMFG 546
           F+V+MWDLNHCDPKK  G
Sbjct: 67  FAVAMWDLNHCDPKKCSG 84


>AE014297-1987|AAF55160.1|  274|Drosophila melanogaster CG4338-PA
           protein.
          Length = 274

 Score =  232 bits (567), Expect = 5e-61
 Identities = 103/161 (63%), Positives = 127/161 (78%)
 Frame = -3

Query: 562 PKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKI 383
           PKKCSGRKL R  LI NL+LG +F GLVLSPVG  CVSP D+ ++ + G+AVIDCSWAK+
Sbjct: 79  PKKCSGRKLARLGLISNLRLGQKFPGLVLSPVGQLCVSPLDRDVVASSGVAVIDCSWAKL 138

Query: 382 DETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFS 203
           DETPF RM+SPHPRLLPFLVAANPINYGKP +LSCVEA+AA ++I G   EA+++L KFS
Sbjct: 139 DETPFGRMRSPHPRLLPFLVAANPINYGKPCKLSCVEAIAATLYICGFTEEARWFLGKFS 198

Query: 202 WGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVKXEQD 80
           WGH+FLELN   L+ YAAC  S  +++ Q  +LE  + E+D
Sbjct: 199 WGHAFLELNDKLLNAYAACKSSDEIVKVQNEYLEKEQQERD 239



 Score = 39.1 bits (87), Expect = 0.007
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -2

Query: 599 FSVSMWDLNHCDPKKMFG 546
           F+V+MWDLNHCDPKK  G
Sbjct: 67  FAVAMWDLNHCDPKKCSG 84


>AE014297-3888|AAF56541.1| 1270|Drosophila melanogaster CG8968-PA
           protein.
          Length = 1270

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 213 DK*NFASLLCPVMNMAAASASTQLNWYGFP 302
           DK   ++ L P  +     + TQLNW+GFP
Sbjct: 47  DKSTMSAALTPQRDSCEDLSLTQLNWHGFP 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,495,907
Number of Sequences: 53049
Number of extensions: 662441
Number of successful extensions: 1264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)