Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n18
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical ...   193   1e-49
AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical ...    31   1.3  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    29   3.9  
AF016421-9|AAC25791.1|  329|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF016668-3|AAO12441.1|  126|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical
           protein F52C12.2 protein.
          Length = 261

 Score =  193 bits (471), Expect = 1e-49
 Identities = 85/161 (52%), Positives = 113/161 (70%)
 Frame = -3

Query: 562 PKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKI 383
           PK+CSGRKLLR NLI  +KLG RF GLVLSP GT  ++P D+  +E  GL V+DCSW ++
Sbjct: 73  PKRCSGRKLLRANLITEVKLGQRFPGLVLSPTGTYTLAPRDRPFVEQNGLCVVDCSWKEV 132

Query: 382 DETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFS 203
           + TP  R+K+P  RLLP+LVAAN +NYGKP  L+C EA+AA ++I G +  A   +  FS
Sbjct: 133 ERTPLHRVKAPEHRLLPYLVAANSVNYGKPCHLTCAEAMAAGLYILGFQEAASRLMKPFS 192

Query: 202 WGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVKXEQD 80
           WG  F+ELN + LDLYAAC   + V+ AQ  +LE +  E++
Sbjct: 193 WGDHFIELNKELLDLYAACDTPEDVIRAQNEYLERIDKERE 233



 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 617 EGIKATFSVSMWDLNHCDPKKMFGP*IIKA 528
           E  K  F ++M+D N CDPK+  G  +++A
Sbjct: 55  EDYKFPFRLAMYDFNQCDPKRCSGRKLLRA 84


>AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical
           protein C03H5.4 protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 409 VIDCSWAKIDETPFSRMKSPHPRLLPFLV 323
           +++C WAK  E P  ++K PHPRL  FL+
Sbjct: 126 LVEC-WAKYPE-PTGQLKCPHPRLSRFLL 152


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 187 LELNSDALDLYAACTDSKSVLEAQATFLESVKXEQDDTAYRGXPT 53
           + LN+ ALDL      + ++LE Q   ++ VK   +   YRG  T
Sbjct: 434 IALNAPALDLEGTRQKAATLLECQGFNVDGVKVVSNQCKYRGFQT 478


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 187 LELNSDALDLYAACTDSKSVLEAQATFLESVKXEQDDTAYRGXPT 53
           + LN+ ALDL      + ++LE Q   ++ VK   +   YRG  T
Sbjct: 434 IALNAPALDLEGTRQKAATLLECQGFNVDGVKVVSNQCKYRGFQT 478


>AF016421-9|AAC25791.1|  329|Caenorhabditis elegans Hypothetical
           protein F44E7.6 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 241 HKSEAKFYLSKFSWGHSFLELNSDALDLYAA---CTDSKSVLEAQATFLESVKXEQDDT 74
           H SE K +   F+   + +    + +DL+AA   C D K +++ Q + L+ +    D+T
Sbjct: 62  HTSERKEFTGLFTDVQAMILDKLNPIDLFAARAVCRDFKDIIDNQKSTLKKIMMNLDET 120


>AF016668-3|AAO12441.1|  126|Caenorhabditis elegans Hypothetical
           protein F36H9.7 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 331 FLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSK 209
           FL A  P+  G+    SC       + I GHK++  +Y+ K
Sbjct: 26  FLSAPEPMCRGEIRNNSCAPENLGCLSIIGHKADGTYYVEK 66


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 791 LAYEL*SVKISNKMAPGKKGSVHGKRSKHHAPRXYAETL 675
           ++ E+  VKI+   AP KK +   ++  HHA   Y + L
Sbjct: 33  VSIEIEGVKIAETRAPEKKETKKSRKILHHAAEIYTKKL 71


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 791 LAYEL*SVKISNKMAPGKKGSVHGKRSKHHAPRXYAETL 675
           ++ E+  VKI+   AP KK +   ++  HHA   Y + L
Sbjct: 74  VSIEIEGVKIAETRAPEKKETKKSRKILHHAAEIYTKKL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,635
Number of Sequences: 27780
Number of extensions: 348228
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)