Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n18
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.47 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.47 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/62 (24%), Positives = 22/62 (35%)
 Frame = -3

Query: 265 AAAMFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVKXE 86
           AA M    ++    FY   +   HS  E+ S   + Y  C    + +     FL S    
Sbjct: 424 AARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTT 483

Query: 85  QD 80
            D
Sbjct: 484 ND 485


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/62 (24%), Positives = 22/62 (35%)
 Frame = -3

Query: 265 AAAMFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAACTDSKSVLEAQATFLESVKXE 86
           AA M    ++    FY   +   HS  E+ S   + Y  C    + +     FL S    
Sbjct: 424 AARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTT 483

Query: 85  QD 80
            D
Sbjct: 484 ND 485


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 172 DALDLYAACTDSKSVLEAQATFLESVKXEQDDTA-YR 65
           D  D+Y A  D+K    A    +E V+ +++  A YR
Sbjct: 86  DPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 172 DALDLYAACTDSKSVLEAQATFLESVKXEQDDTA-YR 65
           D  D+Y A  D+K    A    +E V+ +++  A YR
Sbjct: 86  DPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 172 DALDLYAACTDSKSVLEAQATFLESVKXEQDDTA-YR 65
           D  D+Y A  D+K    A    +E V+ +++  A YR
Sbjct: 86  DPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPYR 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,429
Number of Sequences: 438
Number of extensions: 4396
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)