Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n17
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   0.14 
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   1.8  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    25   1.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    24   2.3  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   3.1  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    24   3.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    23   4.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    23   4.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    23   5.3  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    23   5.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    23   5.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    22   9.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    22   9.3  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    22   9.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    22   9.3  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    22   9.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    22   9.3  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 136 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 41
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 145 STTEYVPTSISGSKKRK 95
           S++ +VP  +S SKKRK
Sbjct: 71  SSSHFVPNGVSNSKKRK 87


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 133 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDN 8
           Y PT   +  +K   N+V +K+ S   + +NT A PT   + +N
Sbjct: 60  YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDEN 103


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 154 VAPSTTEYVPTSISGSKKRKNSVPAKQRSS 65
           + P TT   PTSIS S    N++     SS
Sbjct: 68  ITPGTTTIYPTSISTSGVSSNNIDETSVSS 97


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQ-RSSIKNRRNTTA 38
           AP  +  VPT  +G     +SVP +   S++K +   +A
Sbjct: 490 APQPSSNVPTKFTGGASESSSVPPRPIPSAMKGKAPASA 528


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -2

Query: 148 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRR-----NTTAAPTL 26
           P   EY  T  S +   KNS  A +   +K+R      N+ AA TL
Sbjct: 169 PKRAEYTLTDPSKTSDTKNSTEADEDIEMKSREVSPASNSVAATTL 214


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 148 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 26
           P+T+     SIS +K    S      + +K+  +T AAP L
Sbjct: 85  PTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQL 125


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 175 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 26
           ++A + P+ P T  + P+  + S  +KN     +R S + ++N ++  TL
Sbjct: 570 SLARRKPL-PDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTL 618


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 156 PLHRLLQNTCPLRLAAARKEKTQFRPNNDL 67
           PLH  L++ C L  AA    K  FR  N L
Sbjct: 213 PLHEQLESRCALHTAA----KDPFRSKNSL 238


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 169 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRS 68
           ALK P     T+    S + S K K +VP +Q+S
Sbjct: 530 ALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKS 563


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 136 EYVPTSISGSKKRKNSVPAKQRSSIKNRRN 47
           E V +  S  +KR  + P+K++  ++ R+N
Sbjct: 66  EVVGSDNSSPEKRSENSPSKRKDILEQRKN 95


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 121 SISGSKKRKNSVPAKQRSSIKNR 53
           S+S SK    SVP   R   KNR
Sbjct: 636 SLSSSKDANRSVPESPRREKKNR 658


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = -2

Query: 139 TEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT------AAPTLLMVSDN 8
           T  VP++ SG KK ++S  A +    KN+ N        A P LL+  +N
Sbjct: 646 TPAVPSAKSGLKKDQSSEVANKDVVSKNKDNIAILADREARPQLLLDDNN 695


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 2
           A  TT    T+    KK   SV  +  + +      + AP+   V  NT+
Sbjct: 284 AEFTTSSPSTASLSDKKNPGSVHIRPNNEVAPSSAPSRAPSTTSVESNTE 333


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 125 GHVFCSRRCNGQLERY 172
           GH FCS R  G+ + +
Sbjct: 12  GHEFCSYRIKGEAQNF 27


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRS 68
           +P ++ + PT     K+RKN+VP K  S
Sbjct: 176 SPQSSYHTPT-----KRRKNAVPRKSSS 198


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 163 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 41
           K PV+ ST      + S  K ++     KQ+ + K +   T
Sbjct: 234 KTPVSNSTASQASENASDKKTKEKKSSGKQKIASKKKDQLT 274


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 121 SISGSKKRKNSVPAKQRSSIKNRRNTT 41
           SIS S++ K   P+K + +++++R +T
Sbjct: 572 SISLSEETKQEKPSKLKETVESKRLST 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,264
Number of Sequences: 5004
Number of extensions: 10691
Number of successful extensions: 45
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)