Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13n17
(179 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 0.58
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 0.76
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 1.3
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 1.3
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical pr... 27 2.3
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription... 27 2.3
AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related ... 27 2.3
AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein. 27 2.3
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 26 4.1
U80842-13|AAB37943.1| 208|Caenorhabditis elegans Hypothetical p... 26 4.1
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 25 5.4
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 25 7.1
Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical pr... 25 7.1
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 25 7.1
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 25 7.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 25 7.1
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 25 7.1
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 25 7.1
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 25 7.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 25 7.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 25 7.1
U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical pr... 25 9.4
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 25 9.4
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 75 CLAGTEFFLFLLPLIEVGTYSVV 143
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 169 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLL--MVSDNTQ 2
+L V ST + TS SK + VP++ S+ N +T + TLL +S +TQ
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQ 1444
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 172 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 32
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 172 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 32
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 148 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 2
P T PTSI+ + +R S +KQ+ ++ +R + DN+Q
Sbjct: 351 PLGTISTPTSIATTPQRCTSTDSKQKHALPPQREIIEPDSTTCADDNSQ 399
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 5
AP+TT PT+ + + +VP ++ TT PT + T
Sbjct: 195 APTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTT 243
>Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical
protein ZK858.1 protein.
Length = 841
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 148 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKN 56
P + Y + + S K +N+ P +QR SI+N
Sbjct: 615 PPPSRYAAGTAAPSHKHRNAHPQRQRPSIRN 645
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 98 KKLSSGQTTIFYKKSPQHYCGSNTFNG 18
KKL + T+ K+ QH+C + T +G
Sbjct: 65 KKLRKLEGTVSIKRETQHFCETTTMHG 91
>AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription
factor RUN protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 166 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 26
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related
protein 1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 166 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 26
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 166 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 26
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRN 47
AP++TE + KK K S K+ +S KN++N
Sbjct: 206 APASTESKKSKKIKKKKNKKSKDKKKSNSRKNKKN 240
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 21 IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDG 149
I+ V A +L FF G FF+FL+P++ + + +V G
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTG 99
>U80842-13|AAB37943.1| 208|Caenorhabditis elegans Hypothetical
protein ZC239.2 protein.
Length = 208
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 127 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 2
PT++S SK +N+ P + + T +P +L DN +
Sbjct: 92 PTTVSLSKIEQNATPPTIGDPVTSSSGDTDSPQILEQPDNNE 133
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -2
Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 2
APST P +S S P + S+ TAA T DN Q
Sbjct: 751 APSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTAASTAAYALDNLQ 800
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 45 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 134
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical
protein C36E8.2 protein.
Length = 254
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 178 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIK 59
K+V K PST+ SIS RK + QR IK
Sbjct: 13 KSVRRKSATTPSTSSSSRPSISSQGNRKPILSVNQRQIIK 52
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 45 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 134
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 682 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 713
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 178 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 44
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1622 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1666
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 178 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 44
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1656 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1700
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/40 (22%), Positives = 24/40 (60%)
Frame = -2
Query: 157 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 38
P++ + + T++ +K+K S + ++S+ KN++ +A
Sbjct: 49 PISDAIPDSTRTALDKEEKKKRSKDSSKKSNKKNKKKKSA 88
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 45 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 134
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 163 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDN 8
++PVAPST S +K + K+ ++K +T+A P+L+ S +
Sbjct: 779 RVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINTSSH 830
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 178 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 44
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1767 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1811
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 178 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 44
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1686 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1730
>U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical
protein C39D10.5 protein.
Length = 193
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 157 PVAPSTTEYVPTS-ISGSKKRKNSVPAK 77
P S+T+ P++ ++GS+KRK+S P K
Sbjct: 72 PEVVSSTQPDPSAQLTGSRKRKSSSPKK 99
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 83 GQTTIFYKKSPQHYCGSNTFNG 18
G FY P++ C SNTF G
Sbjct: 204 GMIIYFYSTKPRNNCISNTFLG 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,040,933
Number of Sequences: 27780
Number of extensions: 62414
Number of successful extensions: 272
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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