Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13n11
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 29 0.85
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.6
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 26 4.5
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 26 4.5
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 4.5
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 6.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.9
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 7.9
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 146 PVCAMGTFLSPLTASGTFLGAVMVSTP-SDDSRDSTVSGAAP 268
P + FL+P+T SGTF + + P S R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -1
Query: 212 SLRRGRCLTPSRERERYPSHRPVPFARRSRIRAKKP 105
S RR R P R R R S RP P A + P
Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDP 233
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 513 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 415
LLN Y + W+ L++ + + S DKD Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 687 IQSXIQAIFGSNLQ*KARMSLLP-YFFDDFGSRRPRRLLDQHFGLALTPDDLLSVAAGPL 511
I S + A+F N++ A++ LP FD + R + D+LL A PL
Sbjct: 168 ISSLLSAVFEINME-NAKIRHLPSVIFDGLIEKNKDRPYHINLSCKRAYDELLPRIAVPL 226
Query: 510 LNREYY 493
L EY+
Sbjct: 227 LPHEYH 232
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -3
Query: 483 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEI 379
+H+ +V ++VDK+K ++L + +PE++
Sbjct: 61 KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -1
Query: 254 RLWNRDCHQTGYSPSLRRGRCLTPSRERERYPSHRPVPFARRSRIRAKKPTRRKSRKVYE 75
++ N+ Q Y +L + R +ER P +R R+ P +S++VY+
Sbjct: 3 KIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYD 62
Query: 74 E 72
E
Sbjct: 63 E 63
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 164 TFLSPLTASGTFLGAVMVSTPSDDS-RDSTVSGAAP 268
+F+S +TA T GAV+V P+ + ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 267 GAAPETVESRLSSDGVLTITAPRKVPD 187
G P T+ES ++ D L I RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 490 SVVFPVQQRPGSDTKKIIWC*GKAKMLVQQ 579
+ VF + Q PG+D I C G ++LV +
Sbjct: 661 TAVFAIMQNPGNDWDMIRACIGSKEILVPE 690
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 690 NIQSXIQAIFGSNLQ*KARMSLLPYFFDDFGSRRPRRLLDQHFGL 556
N S I A+ L ++M PY F +RL+ +H GL
Sbjct: 972 NRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGL 1016
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,110
Number of Sequences: 5004
Number of extensions: 50842
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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