Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n11
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 127 DLLANGTGLCDGYLSLSLDGVRHLPRRSDGEYP 225
           +L+A G  L D YLS+  D +     R++  YP
Sbjct: 198 NLVAKGIDLSDFYLSVEWDILEVPASRNEEYYP 230


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 697 EYKHTKXYPSD 665
           EY HTK YP D
Sbjct: 62  EYDHTKNYPFD 72


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 697 EYKHTKXYPSD 665
           EY HTK YP D
Sbjct: 59  EYDHTKNYPFD 69


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 225 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 103
           G  T T      D +  E  +PI +TG   K I ++ E  N
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREEIKN 181


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 249 VESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 103
           +E R    G  TIT      D +  E  + I +TG   K I ++ E  N
Sbjct: 133 LEIRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSKPIFEREEIKN 181


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 64  YYKMAVPRETDSKYCVGVL 8
           Y+K+ V  + DS  C G L
Sbjct: 187 YFKVVVVEDVDSVECCGAL 205


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -3

Query: 606 DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 436
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -3

Query: 606 DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 436
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -3

Query: 606 DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 436
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,620
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)