Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13n04
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   2.9  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   5.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   5.1  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   6.7  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 620 YINLVISSVY*TLSRLLTTPFFVNST 697
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 534 RHGLH-LSKFKNAFASVSTTFVHHPI 460
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 84  LISLVEIYLVDVVHQHVVLMTNFFQRVEYL 173
           L+SL  +YLV    QH++     FQRV +L
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFL 332


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 366 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 473
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,919
Number of Sequences: 5004
Number of extensions: 52378
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)