Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m24
         (486 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P...    26   0.79 
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   5.6  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   7.3  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    22   9.7  
AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding pr...    22   9.7  
AY146720-1|AAO12080.1|  147|Anopheles gambiae odorant-binding pr...    22   9.7  

>AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P450
           reductase protein.
          Length = 679

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 93  VHKVGAFSATDIKNDNRNQYCKYSNSLNVAMYPTN 197
           +HK G  S   ++ D      +Y    ++AMYP N
Sbjct: 295 LHKAGGRSCMHVEFDIEGSKMRYEAGDHLAMYPVN 329


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 88  TPSTKSERLAPRTSKTTTET 147
           TPS+ S      +SKTTT T
Sbjct: 549 TPSSSSSSTTSSSSKTTTST 568


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 91  PSTKSERLAPRTSKTTT 141
           PST   R A RT+ TTT
Sbjct: 569 PSTSRARTATRTATTTT 585


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 329 NIRIKNGFVYVLHKIHKVIDRHKSEVSLCCVVVH 228
           N R ++GF+ VLH +  +         LCC + H
Sbjct: 571 NARFRSGFILVLHGVPGL-------QQLCCCIRH 597


>AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP5 protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 213 APTRPCWWDTW 181
           A +R CWW  W
Sbjct: 2   AASRSCWWWRW 12


>AY146720-1|AAO12080.1|  147|Anopheles gambiae odorant-binding
           protein AgamOBP15 protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 433 YNLSHKMFNAICL*TKTRCNK 371
           Y+   K FN+I L    +CNK
Sbjct: 91  YHAIPKQFNSIALKVLAKCNK 111


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,646
Number of Sequences: 2352
Number of extensions: 11084
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)