Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m24
         (486 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    28   5.9  
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    28   5.9  
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...    28   7.8  

>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 247 YAALSYINVTLCTYTAM-----LVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFK 83
           Y  ++  N  LC  TA+     +VG  A     +   YWF L    ++ LNA   + A+K
Sbjct: 261 YRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWFALE---TLPLNAYFAYLAYK 317

Query: 82  TTEAHEVVYEMKLFQ 38
             E  +     KLF+
Sbjct: 318 FHEKSDSGSSRKLFR 332


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 247 YAALSYINVTLCTYTAM-----LVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFK 83
           Y  ++  N  LC  TA+     +VG  A     +   YWF L    ++ LNA   + A+K
Sbjct: 261 YRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWFALE---TLPLNAYFAYLAYK 317

Query: 82  TTEAHEVVYEMKLFQ 38
             E  +     KLF+
Sbjct: 318 FHEKSDSGSSRKLFR 332


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 HVSHQHGRVGAQRHVNVRQRSIGKLH 259
           HVSH HGR+G  R     + ++G +H
Sbjct: 15  HVSHGHGRIGKHRKHPGGRGNLGGMH 40


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475,520
Number of Sequences: 53049
Number of extensions: 431120
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)