Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m22
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371     28   0.90 
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   1.2  
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838...    26   4.8  

>05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371
          Length = 206

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 104 RVTLSA*EVCGCCCKNCATNNYP*CSTGNI 193
           +VT+SA   CGCCC N      P   T  +
Sbjct: 65  QVTVSAIGGCGCCCGNGKPRGIPSSKTNRV 94


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 143 NNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKEN-MPGEHDHKF 9
           N+N++  +PT+  D N+ KS   NI  V    C  N  P E    F
Sbjct: 178 NDNKQDSRPTSSMDHNVTKSPGSNIPAVESGRCVVNSAPDEPSSSF 223


>06_03_1040 +
           27082978-27083086,27083574-27083632,27083759-27083833,
           27083908-27084024,27084207-27084277,27084432-27084732,
           27084949-27085238,27085779-27085833
          Length = 358

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 164 YSLHNFYNNNRKPLKPTTLHDGNIKKSVYENIT 66
           Y L NFY N+R+ +K  + +DG ++ +   N T
Sbjct: 133 YQLDNFYQNHRRYVK--SRNDGQLRDAAKANQT 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,125,379
Number of Sequences: 37544
Number of extensions: 77469
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)