Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m21
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   8.5  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 652 FLSGGQSEEEASVHLNAINAVDLKRPWV 569
           FL+   S E A VH+  +N  D    WV
Sbjct: 525 FLTNSNSSESALVHMQKLNLPDFTPSWV 552


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 IIRLSRSMYTVFYFEYNFFSKYDAXVWLV 80
           I++ +  MY VFY    F+  Y   VWL+
Sbjct: 305 IVQYTPHMYYVFYITSTFWIIYLLYVWLI 333


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 37  KLHTEILCYSTRQNAQAKLXHRIY*KNYIQNKIQYTSNDLD 159
           KLH+++  +S + NA ++L   +  +N +QN   ++S  +D
Sbjct: 326 KLHSKVDVHSKKLNALSQLNPILRSENVLQNDNHHSSLSMD 366


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 12  CDMLFYVLKTTYGNTMLQYKTKCTSQTXASYLLKKL 119
           C +LF  +KTT+G     Y  K  +Q     L++ L
Sbjct: 228 CSLLFEAIKTTFGLEKDSYVVKAGNQLIQHGLIRLL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,040
Number of Sequences: 5004
Number of extensions: 53097
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)