Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m21
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 138 6e-33
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 131 5e-31
05_04_0255 + 19462668-19462695,19463443-19464491 126 2e-29
08_01_0142 - 1121762-1122822,1123087-1123114 120 1e-27
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 111 6e-25
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 46 4e-05
03_01_0169 + 1385813-1388359 34 0.14
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 30 2.2
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 5.1
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 5.1
01_07_0274 + 42428947-42429108,42429405-42430178 29 5.1
04_04_0869 - 28883688-28884983 28 8.9
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 138 bits (333), Expect = 6e-33
Identities = 66/123 (53%), Positives = 85/123 (69%)
Frame = -1
Query: 736 KTYTPXDVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFS 557
K +P +A TV A RTVPAAVP + FLSGGQSEEEA+V+LNA+N + K+PW L+FS
Sbjct: 236 KKVSPQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFS 295
Query: 556 YGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKS 377
+GRALQ S L+AWGGKTEN++ Q+ I R KAN A +G Y ++ AS+S VK
Sbjct: 296 FGRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKD 355
Query: 376 HAY 368
+ Y
Sbjct: 356 YKY 358
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 131 bits (317), Expect = 5e-31
Identities = 62/116 (53%), Positives = 80/116 (68%)
Frame = -1
Query: 715 VARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 536
+ TV A RTVP AVPG+ FLSGGQSEEEAS +LNA+N +++ +PW LTFS+GRALQ
Sbjct: 435 IGEYTVAALRRTVPPAVPGIVFLSGGQSEEEASQNLNAMNKLEVLKPWTLTFSFGRALQQ 494
Query: 535 SVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 368
S ++ WGGK EN+ A Q + R KAN A +GKY G+ A S+S +VK + Y
Sbjct: 495 STIKKWGGKKENVAAAQAAFLARCKANSEATLGKY-GGAAGDAATSESLYVKGYTY 549
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 126 bits (303), Expect = 2e-29
Identities = 61/123 (49%), Positives = 80/123 (65%)
Frame = -1
Query: 736 KTYTPXDVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFS 557
K +P +A TV RTVPAAVP + FLSGGQSEEEA+++LNA+N + K+PW L+FS
Sbjct: 236 KKVSPEVIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFS 295
Query: 556 YGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKS 377
+GRALQ S L+AW GK ENI + + R KAN A +G Y ++ AS+S VK
Sbjct: 296 FGRALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKD 355
Query: 376 HAY 368
+ Y
Sbjct: 356 YKY 358
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 120 bits (289), Expect = 1e-27
Identities = 62/121 (51%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Frame = -1
Query: 724 PXDVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDL--KRPWVLTFSYG 551
P VA TV A LRTVP AVP + FLSGGQSEEEA+ +LNA+N V K+PW LTFS+G
Sbjct: 242 PEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSFG 301
Query: 550 RALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHA 371
RALQ S L+AW GK EN+ Q L+ R +AN A +G Y + S++ VK +
Sbjct: 302 RALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENLHVKDYK 361
Query: 370 Y 368
Y
Sbjct: 362 Y 362
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 111 bits (267), Expect = 6e-25
Identities = 58/124 (46%), Positives = 78/124 (62%)
Frame = -1
Query: 739 KKTYTPXDVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTF 560
K TP V+ T+ R +P AVPG+ FLSGGQSE EA+ +LNA+N PW ++F
Sbjct: 268 KDRATPEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQGP--NPWHVSF 325
Query: 559 SYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVK 380
SY RALQ + L+ WGG+ EN+ A Q L+ RAKAN LA +GKY + + A + FVK
Sbjct: 326 SYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDG-EAAEAKEGMFVK 384
Query: 379 SHAY 368
++ Y
Sbjct: 385 NYVY 388
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = -1
Query: 613 HLNAIN-AVDLKRPWV--LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAK 461
+LNA+N A PW ++FSY RALQ + L+ WG + EN+ A Q EL A+
Sbjct: 356 NLNAMNQAAPSANPWRWRVSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>03_01_0169 + 1385813-1388359
Length = 848
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 558 ATGAPSRLRCSAPGEGRPRTFSPDSRS*SSVLR-PTVSQQSANTLPALF 415
A GA S + S PG+ RTF PD+ SS R P V+ +NT+P L+
Sbjct: 27 ACGAASNV--SFPGDSPARTFVPDAPFLSSAGRVPAVTSTGSNTIPPLY 73
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 706 ATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASV 530
A VTA L +VP + P SGG+ + + LN + +D+ R ++L G ++ V
Sbjct: 131 AAVTALLCSVPISGPSDAASSGGKDKAKKPTRLNIV-GLDITRQFLLHIVSGTDVEKDV 188
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 231 SIKMR*KYIFTYLLLNSLTKLN 296
++K R +YIFTYLL N +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 184 NTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVVF 35
N F K ++ + +++ + YNFF +V F YC ++ P +F
Sbjct: 322 NLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYC-LIIPATIF 370
>01_07_0274 + 42428947-42429108,42429405-42430178
Length = 311
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 483 CCPARMFSVFPPQARSTE-AWRARP*LNVRTQGLLRSTALIAFRCTEASSSD*PPERNVT 659
C PA +PP A+ + R T G ++ L+A TEAS D PP +
Sbjct: 23 CAPAASAGDYPPTAKGLSYGFYQRSCPKAETIGC-DASVLLARTATEASELDAPPNETIR 81
Query: 660 P 662
P
Sbjct: 82 P 82
>04_04_0869 - 28883688-28884983
Length = 431
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 383 DKVRFRSGQRRNRAGNVFADCCETVGLSTLDQLLLSGENVLGLPS----PGAEHRSLEGA 550
D V +G ++R + D TV + T+D +LL E G PS PG +
Sbjct: 290 DDVSMDTGMDKSRVASTVLDDTPTV-IHTVDSVLLPPELFGGAPSPAPAPGPASDVPAAS 348
Query: 551 PVAERQNPGP 580
P E +P P
Sbjct: 349 PAPEGSSPAP 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,193
Number of Sequences: 37544
Number of extensions: 327463
Number of successful extensions: 913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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