Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m21
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 150 1e-36
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 150 1e-36
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 148 4e-36
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 148 4e-36
U23413-1|AAA64290.2| 182|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 28 7.9
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 28 7.9
AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine re... 28 7.9
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 150 bits (363), Expect = 1e-36
Identities = 75/116 (64%), Positives = 92/116 (79%)
Frame = -1
Query: 715 VARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 536
+ ATVTA R VPAAVPG+TFLSGGQSE +A+ +LNAIN+V L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 535 SVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 368
SVL+AWGGK ENI A Q+ L+ R+KANG A++GKY AG + AA++S FV H+Y
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKY-AGEDAAGAAAESLFVAKHSY 366
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 150 bits (363), Expect = 1e-36
Identities = 75/116 (64%), Positives = 92/116 (79%)
Frame = -1
Query: 715 VARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 536
+ ATVTA R VPAAVPG+TFLSGGQSE +A+ +LNAIN+V L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 535 SVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 368
SVL+AWGGK ENI A Q+ L+ R+KANG A++GKY AG + AA++S FV H+Y
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKY-AGEDAAGAAAESLFVAKHSY 366
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 148 bits (359), Expect = 4e-36
Identities = 72/117 (61%), Positives = 87/117 (74%)
Frame = -1
Query: 718 DVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQ 539
D+ ATVTA R VP+AVPGV FLSGGQSEE+A+++LNAIN V K+PW LTFSYGRALQ
Sbjct: 249 DIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQ 308
Query: 538 ASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 368
AS L W GK ENI A Q+ L+ RA+ N LA+VGKY + AAS+S FV +H+Y
Sbjct: 309 ASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 365
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 148 bits (359), Expect = 4e-36
Identities = 72/117 (61%), Positives = 87/117 (74%)
Frame = -1
Query: 718 DVARATVTAXLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQ 539
D+ ATVTA R VP+AVPGV FLSGGQSEE+A+++LNAIN V K+PW LTFSYGRALQ
Sbjct: 250 DIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQ 309
Query: 538 ASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 368
AS L W GK ENI A Q+ L+ RA+ N LA+VGKY + AAS+S FV +H+Y
Sbjct: 310 ASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 366
>U23413-1|AAA64290.2| 182|Caenorhabditis elegans Hypothetical
protein B0353.1 protein.
Length = 182
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 579 GPGF*RSATGAPSRLRCSAPGEGRPRTF-SPDSRS*SSVLRPTVSQQSAN 433
GP RS +GA ++R RP F SP S S + + PT ++ S+N
Sbjct: 20 GPMLHRSPSGAKRKIRQKREEASRPSPFLSPSSSSSQTSISPTPTETSSN 69
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 196 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVV 38
F F FL+T+ +YT+ F ++ + +HF+L FP+++
Sbjct: 99 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 151
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 196 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVV 38
F F FL+T+ +YT+ F ++ + +HF+L FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 196 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVV 38
F F FL+T+ +YT+ F ++ + +HF+L FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 196 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVV 38
F F FL+T+ +YT+ F ++ + +HF+L FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 196 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAXVWLVHFVLYCSIVFPYVV 38
F F FL+T+ +YT+ F ++ + +HF+L FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172
>AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein211 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 262 VKIYF*RIFIDLTPSMIDVMKLFFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYD--AXV 89
V I+ + + TPS + +K F FH F I+ +S + YF + + Y A +
Sbjct: 30 VHIFVGYVILFKTPSRMGNVKWFMFHVHFWSAILDVSFTFLVTPYFIFPATAGYSLGAFI 89
Query: 88 WL 83
W+
Sbjct: 90 WI 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,913
Number of Sequences: 27780
Number of extensions: 311571
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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