Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m21
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 144 CILYFILNIIFLVNTML*FGLCILSCTVA 58
           CIL+F++ ++F+    +  GL I S ++A
Sbjct: 210 CILFFLIPMVFIAVLYIRIGLRIQSDSLA 238


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 599 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 495
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 471 KRCKDLASFMGNLLQETRTPGFGKDVLATDERSFS 505


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 599 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 495
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 177 KRCKDLASFMENLLQETRTPGFGKDVLATDERSFS 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,670
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)