Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m18
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0021 - 24986483-24986726,24986764-24986906,24987361-24987423     26   7.8  
05_01_0101 + 680319-680600,680775-681614                               26   7.8  

>05_06_0021 - 24986483-24986726,24986764-24986906,24987361-24987423
          Length = 149

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 54  VGFTYC*IVYMLMFVYNFTRVLSFRL*YKDNSTKNDNLK 170
           V +TYC  V  LMFV ++T+    RL  +++     N++
Sbjct: 80  VAYTYCYAVAGLMFVAHYTQESGQRLKVREHGVDWTNIE 118


>05_01_0101 + 680319-680600,680775-681614
          Length = 373

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 181 VIFFFKLSFLVELSLYYNLKDNTLV 107
           +IF F  S++ + + +YN K NT++
Sbjct: 349 LIFLFFYSYMYKFTYWYNTKYNTII 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,928,990
Number of Sequences: 37544
Number of extensions: 101708
Number of successful extensions: 196
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)